Refereed Journal Publications
Book:
A. Ozcan, “Non-destructive Optical Characterization Tools” Verlag DM Publishing House, 2008
Publisher: VDM Verlag Dr. Muller.
Language: English
ISBN-10: 3639104498
ISBN-13: 978-3639104493
Amazon – Barnes & Noble – Bookfinder
Book Chapters:
: S. Seo, T. Su, A. Erlinger, and A. Ozcan, Lensfree Imaging Cytometry and Diagnostics for Point-of-care and Telemedicine Applications.
Editor: Kris Iniewski.
CMOS Biomicrosystems, Wiley (published in 2011).
: A.F. Coskun, T. Su, I. Sencan, and A. Ozcan, Lensless Fluorescent Imaging On a Chip: A new Method Toward High-throughput Screening of Rare Cells
Editors: Keith E. Herold & Avi Rasooly
Biosensors and Biodetection Technologies, CRC Press
: S. O. Isikman, W. Bishara, O. Mudanyali, T. Su, D. Tseng and A. Ozcan, Lensfree Computational Microscopy Tools for On-Chip Imaging of Bio-Chips
Editors: Robert M. Westervelt & David Issadore
Point of Care Diagnostics on a Chip, Springer (to be published in 2012)
: T. Su and A. Ozcan, Partially-coherent Lensless Holographic Microscopy for Automated Semen Analysis on a Chip
Editors: Natan T. Shaked, Zeev Zalevsky, & Lisa L. Satterwhite
Biomedical Optical Phase Microscopy and Nanoscopy, Elsevier (ISBN-13: 978-0124158719)
: S. O. Isikman, A. Greenbaum, M. Lee, W. Bishara, O. Mudanyali, T. Su and A. Ozcan, Lensfree Computational Microscopy Tools for Cell and Tissue Imaging at the Point-of-Care and in Low-Resource Settings
Editor: Stanley Cohen
New Approaches to Cell and Tissue Imaging in Pathology, IOS Press (to be published in 2012)
: A.F. Coskun, S.A. Arpali, C. Arpali, T. Su, I. Sencan, D. Herman, Y. Suh and A. Ozcan, Lensfree On-Chip Fluorescence Microscopy for High-throughput Imaging of Bio-Chips
Editor: Dr. Francesco Baldini
Proceedings of the Italian National Conference on Sensors, Springer (to be published in 2012)
Journal Papers:
: A. Greenbaum, A. Feizi, N. Akbari, and A. Ozcan, ”Wide-field computational color imaging using pixel super-resolved on-chip microscopy,” Optics Express (2013)
: A. Greenbaum, W. Luo, B. Khademhosseinieh, T-W. Su, A.F. Coskun, and A. Ozcan, ”Increased space-bandwidth product in pixel super-resolved lensfree on-chip microscopy,” Scientific Reports (Nature Publishing Group) (2013)
: Q. Wei, E. McLeod, H. Qi, Z. Wan, R. Sun, and A. Ozcan, ”On-Chip Cytometry using Plasmonic Nanoparticle Enhanced Lensfree Holography,” Scientific Reports (Nature Publishing Group) (2013)
: K-W. Huang, T-W. Su, A. Ozcan, and P-Y. Chiou, ”Optoelectronic Tweezers Integrated with Lens-free Holographic Microscopy for Wide-field Interactive Cell and Particle Manipulation on a Chip,” Lab on a Chip (2013)
: T-W. Su, I. Choi, J. Feng, K. Huang, E. McLeod, and A. Ozcan, ”Sperm Trajectories Form Chiral Ribbons,” Scientific Reports (Nature Publishing Group) (2013)
: H. Zhu, and A. Ozcan, ”Wide-field fluorescent microscopy and fluorescent imaging flow cytometry on a cell-phone,” Journal of Visualized Experiments (JoVE) (2013)
: E. McLeod, W. Luo, O. Mudanyali, A. Greenbaum, and A. Ozcan, ”Toward Giga-pixel Nanoscopy On a Chip: A computational wide-field look at the nano-scale without the use of lenses,” Lab on a Chip (2013)
: O. Mudanyali, E. McLeod, W. Luo, A. Greenbaum, A.F. Coskun, Y. Hennequin, C. Allier, and A. Ozcan, ”Wide-field optical detection of nano-particles using on-chip microscopy and self-assembled nano-lenses,” Nature Photonics (2013)
: H. Zhu, I. Sencan, J. Wong, S. Dimitrov, D. Tseng, K. Nagashima, and A. Ozcan, ”Cost-effective and Rapid Blood Analysis on a Cell-phone,” Lab on a Chip (2013)
: J. Weidling, S.O. Isikman, A. Greenbaum, A. Ozcan, and E. Botvinick, ”Lensfree Computational Imaging of Capillary Morphogenesis within 3D Substrates,” Journal of Biomedical Optics (2012)
DOI:10.1117/1.JBO.17.12.126018
: A.F. Coskun, J. Wong, D. Khodadadi, R. Nagi, A. Tey, and A. Ozcan, ”A personalized food allergen testing platform on a cellphone,” Lab on a Chip (2012)
: S. Mavandadi, S. Feng, F. Yu, S. Dimitrov, K. Nielsen, W.R. Prescott, and A. Ozcan, ”A Mathematical Framework for Combining Decisions of Multiple Experts toward Accurate and Remote Diagnosis of Malaria Using Tele-Microscopy,” PLoS ONE (2012)
DOI:10.1371/journal.pone.0046192 – PDF
: S. Mavandadi, S. Feng, F. Yu, S. Dimitrov, R. Yu, and A. Ozcan, ”BioGames: A Platform for Crowd-sourced Bio-Medical Image Analysis and Tele-Diagnosis,” Games for Health Journal (2012)
DOI:10.1089/g4h.2012.0054 – PDF – 
: T-W. Su, L. Xue and A. Ozcan, ”High-throughput lensfree 3D tracking of human sperms reveals rare statistics of helical trajectories,” Proceedings of the National Academy of Sciences (PNAS) (2012)
DOI:10.1073/pnas.1212506109 – PDF
: S.A. Arpali, C. Arpali, A.F. Coskun, H. Chiang, and A. Ozcan, ”High-throughput screening of large volumes of whole blood using structured illumination and fluorescent on-chip imaging,” Lab on a Chip (2012)
: S.O. Isikman, A. Greenbaum, W. Luo, A.F. Coskun, and A. Ozcan, ”Giga-Pixel Lensfree Holographic Microscopy and Tomography using Color Image Sensors,” PLoS ONE (2012)
DOI:10.1371/journal.pone.0045044 – PDF
: H. Zhu, S.O. Isikman, O. Mudanyali, A. Greenbaum, and A. Ozcan, ”Optical Imaging Techniques for Point-of-care Diagnostics,” Lab on a Chip (2012)
DOI:10.1039/C2LC40864C – Invited Manuscript
: A. Greenbaum, W. Luo, T-W. Su, Z. Göröcs, L. Xue, S.O. Isikman, A.F. Coskun, O. Mudanyali, and A. Ozcan, ”Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy,” Nature Methods (2012)
: Z. Göröcs, and A. Ozcan, ”On-Chip Biomedical Imaging,” IEEE Reviews in Biomedical Engineering (2012)
: S. Mavandadi, S. Dimitrov, S. Feng, F. Yu, R. Yu, U. Sikora, and A. Ozcan, ”Crowd-sourced BioGames: Managing The Big Data Problem for Next-Generation Lab-on-a-Chip Platforms,” Lab on a Chip (2012)
: S.O. Isikman, W. Bishara, and A. Ozcan, “Lensfree On-chip Tomographic Microscopy employing Multi-Angle Illumination and Pixel Super-Resolution,” Journal of Visualized Experiments (JoVE) (66), e4161 (2012)
: E. McLeod, and A. Ozcan, “Nanofabrication using near-field optical probes,” Journal of the Association for Laboratory Automation (JALA) (2012)
DOI:10.1177/2211068212450289 – Invited Manuscript
: S. Mavandadi, S. Dimitrov, S. Feng, F. Yu, U. Sikora, O. Yaglidere, S. Padmanabhan, K. Nielsen, and A. Ozcan, “Distributed Medical Image Analysis and Diagnosis through Crowd-Sourced Games: A Malaria Case Study,” PLoS ONE (2012)
DOI:10.1371/journal.pone.0037245 –
: O. Mudanyali, S. Dimitrov, U. Sikora, S. Padmanabhan, I. Navruz, and A. Ozcan, “Integrated Rapid-Diagnostic-Test Reader Platform on a Cellphone,” Lab on a Chip (2012)
: S.O. Isikman, A. Greenbaum, M. Lee, W. Bishara, O. Mudanyali, T. Su, and A. Ozcan, “Lensfree computational microscopy tools for cell and tissue imaging at the point-of-care and in low-resource settings,” Anal. Cell. Pathology, vol. 36, pp. 1-19 (2012)
: A. Greenbaum, U. Sikora, and A. Ozcan, “Field-portable wide-field microscopy of dense samples using multi-height pixel super-resolution based lensfree imaging,” Lab on a Chip (2012)
: H. Zhu, U. Sikora, and A. Ozcan, “Quantum dot enabled detection of Escherichia coli using a cell-phone,” Analyst (2012)
: A. Greenbaum, and A. Ozcan, “Maskless imaging of dense samples using pixel super-resolution based multi-height lensfree on-chip microscopy,” Optics Express (2012)
: S.B. Kim, H. Bae, K. Koo, M.R. Dokmeci, A. Ozcan, and A. Khademhosseini, “Lensfree Imaging for Biological Applications,” Journal of the Association for Laboratory Automation (JALA) (2012) – Cover Article
DOI:10.1177/2211068211426695
: S.O. Isikman, W. Bishara, U. Sikora, O. Yaglidere, and A. Ozcan, “Multi-angle illumination with pixel super-resolution enables lensfree on-chip tomography,” SPIE Newsroom (2011)
: S.O. Isikman, W. Bishara and A. Ozcan, “Partially Coherent Lensfree Tomographic Microscopy,” Applied Optics (2011)
: W. Bishara, S.O. Isikman, and A. Ozcan, “Lensfree Optofluidic Microscopy and Tomography,” Annals of Biomedical Engineering (ABME) (2011)
: M. Lee, O. Yaglidere, and A. Ozcan, “Field-portable reflection and transmission microscopy based on lensless holography,” Biomedical Optics Express (2011)
: O. Mudanyali, W. Bishara, and A. Ozcan, “Lensfree super-resolution holographic microscopy using wetting films on a chip,” Optics Express (2011)
: A.F. Coskun, T. Su, I. Sencan, and A. Ozcan, “Lensless Fluorescent Microscopy on a Chip,” Journal of Visualized Experiments (JoVE) (2011)
: H. Zhu, S. Mavandadi, A.F. Coskun, O. Yaglidere, and A. Ozcan, “Optofluidic fluorescent imaging cytometry on a cell-phone,” Analytical Chemistry (2011)
: S.O. Isikman, W. Bishara, O. Mudanyali, I. Sencan, T. Su, D. Tseng, O. Yaglidere, U. Sikora, A. Ozcan, “Lensfree On-Chip Microscopy and Tomography for Bio-Medical Applications,” IEEE Journal of Selected Topics in Quantum Electronics (2011)
DOI:10.1109/JSTQE.2011.2161460
: W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart, and A. Ozcan, “Handheld and lensless microscope identifies malaria parasites,” SPIE Newsroom (2011)
: G. Biener, A. Greenbaum, S.O. Isikman, K. Lee, D. Tseng and A. Ozcan, “Combined Reflection and Transmission Microscope for Telemedicine Applications in Field Settings,” Lab on a Chip (2011)
: S.O. Isikman, W. Bishara, H. Zhu, and A. Ozcan, “Opto-fluidic Tomography On a Chip,” Applied Physics Letters (2011)
: S.O. Isikman, W. Bishara, U. Sikora, O. Yaglidere, J. Yeah, and A. Ozcan, “Field-Portable Lensfree Tomographic Microscope,” Lab on a Chip (2011)
: S.O. Isikman, W. Bishara, S. Mavandadi, F.W. Yu, S. Feng, R. Lau and A. Ozcan, “Lensfree Optical Tomographic Microscope with a Large Imaging Volume on a Chip” PNAS (2011)
: W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart, and A. Ozcan, “Holographic pixel super-resolution in portable lensless on-chip microscopy using a fiber-optic array,” Lab on a Chip (2011)
: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Wide-field Lensless Fluorescent Microscopy Using a Tapered Fiber-optic Faceplate On a Chip,” Analyst (2011)
: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Lensfree Fluorescent On-Chip Imaging of Transgenic Caenorhabditis elegans Over an Ultra-Wide Field-of-View,” PLoS ONE (2011)
DOI:10.1371/journal.pone.0015955
: W. Bishara, H. Zhu, and A. Ozcan, “Holographic Opto-fluidic Microscopy,” Optics Express (2010)
: B. Khademhosseini, G. Biener, I. Sencan, T. Su, A.F. Coskun and A. Ozcan, “Lensfree Sensing on a Micro-fluidic Chip using Plasmonic Nano-apertures,” Applied Physics Letters (2010)
: H. Zhu, O. Yaglidere, T. Su, D. Tseng, and A. Ozcan, “Cost-effective and Compact Wide-field Fluorescent Imaging on a Cell-phone”, Lab on a Chip (2010)
: B. Khademhosseini, G. Biener, I. Sencan, and A. Ozcan, “Lensfree Color Imaging On a Nano-structured Chip using Compressive Decoding,” Applied Physics Letters, 2010
: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Lensfree Fluorescent On-Chip Imaging Over an Ultra-Wide Field-of-View using Compressive Sampling,” Special Issue of “Optics in 2010” Optics & Photonics News, December 2010
: T. Su, A. Erlinger, D. Tseng, and A. Ozcan, “A Compact and Light-weight Automated Semen Analysis Platform using Lensfree On-Chip Microscopy” Analytical Chemistry (2010)
: O. Mudanyali, C. Oztoprak, D. Tseng, A. Erlinger, and A. Ozcan, “Detection of Waterborne Parasites using Field-portable and Cost-effective Lensfree Microscopy,” Lab on a Chip (2010)
: W. Bishara, T. Su, A.F. Coskun, and A. Ozcan, “Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution,” Optics Express Vol. 18, Issue 11, pp. 11181-11191 (2010)
: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Lensfree wide-field fluorescent imaging on a chip using compressive decoding of sparse objects,” Optics Express Vol. 18, Issue 10, pp. 10510-10523 (2010)
: S. Seo, S.O. Isikman, I. Sencan, O. Mudanyali, T. Su, W. Bishara, A. Erlinger, A. Ozcan, “High-throughput Lensfree Blood Analysis On a Chip,” Analytical Chemistry (2010)
: T. Su, S.O. Isikman, W. Bishara, D. Tseng, A. Erlinger and A. Ozcan, “Multi-angle lensless digital holography for depth resolved imaging on a chip,” Optics Express (2010)
: B. Khademhosseini, I. Sencan, G. Biener, T. Su, A.F. Coskun, D. Tseng and A. Ozcan, “Lensfree On-chip Imaging using Nano-structured Surfaces,” Applied Physics Letters 96, 171106 (2010)
Selected for the Virtual Journal of Biological Physics Research. Highlighted in Nature Photonics.
: D. Tseng, O. Mudanyali, C. Oztoprak, S.O. Isikman, I. Sencan, O. Yaglidere and A. Ozcan, “Lensfree Microscopy on a Cell-phone,” Lab Chip (2010) – Cover Article
: O. Mudanyali, D. Tseng, C. Oh, S.O. Isikman, I. Sencan, W. Bishara, C. Oztoprak, S. Seo, B. Khademhosseini, and A. Ozcan, “Compact, Light-weight and Cost-effective Microscope based on Lensless Incoherent Holography for Telemedicine Applications,” Lab Chip (2010)
: G.Stybayeva, O. Mudanyali, S. Seo, J. Silangcruz, M. Macal, E. Ramanculov, S. Dandekar, A. Erlinger, A. Ozcan, A. Revzin, “Lensfree Holographic Imaging of Antibody Microarrays for High-Throughput Detection of Leukocyte Numbers and Function,” Analytical Chemistry (2010)
: S.O. Isikman, I. Sencan, O. Mudanyali, W. Bishara, C. Oztoprak and A. Ozcan, “Color and Monochrome Lensless On-chip Imaging of Caenorhabditis Elegans Over a Wide Field-of-View,” Lab Chip (2010)
: C. Oh, S. O. Isikman, B. Khademhosseini and A. Ozcan, “On-chip differential interference contrast microscopy using lensless digital holography,” Optics Express, Vol. 18 Issue 5, 4717-4726 (2010)
Selected for the Virtual Journal for Biomedical Optics.
: A.F. Coskun, T. Su, and A. Ozcan, “Wide field-of-view lens-free fluorescent imaging on a chip,” Lab Chip (2010)
: A. Ozcan, S.O. Isikman, O. Mudanyali, D. Tseng, I. Sencan, “Lensfree on-chip holography facilitates novel microscopy applications,” SPIE Newsroom (2010)
: A. Ozcan, “Smart Technology for Global Access to healthcare,” SPIE Newsroom (2010)
: O. Mudanyali, A. Erlinger, S. Seo, T. Su, D. Tseng, A. Ozcan, “Lensless On-chip Imaging of Cells Provides a New Tool for Cell-Biology and Diagnostics,” Journal of Visualized Experiments (JoVE) (2009)
: S. Seo, T. Su, D.K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree Holographic Imaging for On-Chip Cytometry and Diagnostics,” Lab Chip (2009)
: Ting-wei Su, Sungkyu Seo, Anthony Erlinger, Derek Tseng, and Aydogan Ozcan, “Towards Wireless Health: Lensless On-Chip Cytometry,” Optics and Photonics News, Vol. 19, Issue 12, pp. 24-24 (2008)
: T. Su, S. Seo, A. Erlinger, D. Tseng and A. Ozcan, “Lensfree on-chip cytometry towards wireless health,” IEEE LEOS Newsletter, October 2008
: T. Su, S. Seo, A. Erlinger, and A. Ozcan, “Multi-color LUCAS: Lensfree on-chip cytometry using tunable monochromatic illumination and digital noise reduction,” Cellular and Molecular Bioengineering (2008)
Outstanding Paper Award – PRESS RELEASE – IN THE NEWS
: T. Su, S. Seo, A. Erlinger, and A. Ozcan, “High-throughput Imaging and Characterization of a Heterogeneous Cell Solution On a Chip,” Biotechnology and Bioengineering (2008)
Highlighted in the Spotlight Feature of the Journal.
: A. Bilenca, J. Cao. M. Colice, A. Ozcan, B.E. Bouma, L. Raftery, G.J. Tearney, “Fluorescence Interferometry: Principles and Applications in Biology,” Ann. N.Y. Acad. Sci. 1130: 68–77 (2008)
: A. Ozcan, and U. Demirci, “Ultra wide-field lens-free monitoring of cells on-chip,” Lab Chip (2007)
: A. Ozcan, E. Cubukcu, B.E. Bouma, F. Capasso, G.J. Tearney, “Differential Near-field Scanning Optical Microscopy using Sensor Arrays,” IEEE Journal of Selected Topics in Quantum Electronics 13, 1721 (2007)
(Invited)
DOI: 10.1109/JSTQE.2007.910799
: A. Ozcan, A. Bilenca, A.E. Desjardin, B. E. Bouma, G. J. Tearney, “A study of speckle reduction in optical coherence tomography images using digital filtering,” Journal of Optical Society of America, A 24, 1901 (2007)
: A. Bilenca, T. Lasser, A. Ozcan, R. Leitgeb, B. E. Bouma, G. J. Tearney, “Image formation in fluorescence coherence-gated imaging through scattering media,” Optics Express 15, 2810 (2007)
: A. Ozcan, E. Cubukcu, A. Bilenca, K.B. Crozier, B.E. Bouma, F. Capasso, and G.J. Tearney, “Differential Near-field scanning optical microscopy,” Nano Letters 6, 2609 (2006)
: A. Ozcan and U. Demirci, “Rewritable self-assembled long-period gratings in photonic bandgap fibers using microparticles,” Optics Communications 270, 225 (2007)
(published online 10/2006)
DOI: 10.1016/j.optcom.2006.09.032
: A. Ozcan, A. Bilenca, B. E. Bouma, G. J. Tearney, “Mirror tunnel microscope,” Applied Physics Letters 89, 131124 (2006)
: A. Ozcan, A. Tewary, M. J. F. Digonnet, and G. S. Kino, “Observation of mode coupling in bitapered air-core fibers,” Optics Communications 271, 391 (2007)
(published online 11/2006)
DOI: 10.1016/j.optcom.2006.10.039
: A. Bilenca, A. Ozcan, B. E. Bouma, G. J. Tearney, “Fluorescence coherence tomography,” Optics Express 14, 7134-7143 (2006)
Selected to appear in The Virtual Journal for Biomedical Optics, Vol. 1, Issue 9, 2006.
Also highlighted in a research story in the Biophotonics International Magazine, October 2006.
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Quasi-phase-matched grating characterization using minimum-phase functions,” Optics Communications 269, 199
(published online 8/2006)
DOI: 10.1016/j.optcom.2006.07.047
: A. Ozcan, “Characterization of nonlinear thin films using logarithmic Hilbert transform,” Electronics Letters 42, 647-648 (2006)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, ” Minimum-phase function based processing in frequency-domain optical coherence tomography systems,” Journal of Optical Society of America, A 23, 1669-1677 (2006)
Selected to appear in The Virtual Journal for Biomedical Optics, Vol. 1, Issue 8, 2006
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Characterization of fiber Bragg gratings using spectral interferometry based on minimum-phase functions,” IEEE Journal of Lightwave Technology 24, 1739-1757 (2006)
: A. Ozcan, M. J. F. Digonnet, L. Lablonde, D. Pureur and G. S. Kino, “A new iterative technique to characterize and design transmission fiber Bragg gratings,” IEEE Journal of Lightwave Technology 24, 1913-1921 (2006)
: U. Demirci, and A. Ozcan, “Picolitre acoustic droplet ejection by femtosecond laser micromachined multiple-orifice membrane-based 2D ejector arrays,” Electronics Letters 41, 1219-1220 (2005)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Detailed analysis of inverse Fourier transform techniques to uniquely infer second-order nonlinearity profile of thin films,” Journal of Applied Physics 97, 013502 (2005)
: A. Ozcan, M. J. F. Digonnet, G. S. Kino, F. Ay, and A. Aydinli, “Characterization of thermally poled germanosilicate thin films,” Optics Express 12, 4698-4708 (2004)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Group delay recovery using iterative processing of amplitude of transmission spectra of fibre Bragg gratings,” Electronics Letters 40, 1104-1105 (2004)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Iterative processing of second-order optical nonlinearity depth profiles,” Optics Express 12, 3367-3376 (2004)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Simplified inverse Fourier transform technique to measure optical nonlinearity profiles using reference sample,” Electronics Letters 40, 551-552 (2004)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Improved technique to determine second-order optical nonlinearity profiles using two different samples,” Appl. Phys. Lett. 84, 681-683 (2004)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Cylinder-assisted Maker fringe technique,” Electronics Letters 39, 1834-1835 (2003)
: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Inverse Fourier Transform technique to determine second-order optical nonlinearity spatial profiles,” Appl. Phys. Lett. 82, 1362-1364 (2003)
