Journal Papers:

:D. Zhang, Y. Li, J. Geng, H. Min Kim, M. Ma, S. Wang, I. Kim, T.J. Wijaya, N. Higashitarumizu, I.K.M.R. Rahman, D. Urmossy, J. Bullock, A. Ozcan, Ali Javey, “Spectral kernel machines with electrically tunable photodetectors,” Science (2025)

DOI: 10.1126/science.ady6571

:M.S.S. Rahman, Y. Li, X. Yang, S. Chen, A. Ozcan, “Massively parallel and universal approximation of nonlinear functions using diffractive processors,” eLight (2025)

DOI: 10.1186/s43593-025-00113-w

: G. Volpe, et al. “Roadmap on deep learning for microscopy,” Journal of Physics: Photonics (IOP) (2025)

DOI: 10.1088/2515-7647/ae0fd1

: A. Momeni, et al. “Training of physical neural networks” Nature (2025)

DOI: 10.1038/s41586-025-09384-2

: S. Chen, Y. Li, Y. Wang, H. Chen, A. Ozcan, “Optical generative models,” Nature (2025)

DOI: 10.1038/s41586-025-09446-5

: C-Y. Shen, P. Batoni, X. Yang, J. Li, L. Kun, J. Stack, J. Gardner, K. Welch, and A. Ozcan, “Broadband unidirectional visible imaging using wafer-scale nano-fabrication of multi-layer diffractive optical processors,” Light: Science & Applications (2025)

DOI: 10.1038/s41377-025-01971-2

: M.J. Fanous, C.M. Seybold, H. Chen, N. Pillar, A. Ozcan, “BlurryScope enables compact, cost-effective scanning microscopy for HER2 scoring using deep learning on blurry images,” npj Digital Medicine (2025)

DOI: 10.1038/s41746-025-01882-x

: X. Yang, M.J. Fanous, H. Chen, R. Lee, P. Casteleiro Costa, Y. Li, L. Huang, Y. Zhang, A. Ozcan, “Snapshot multi-spectral imaging through defocusing and a Fourier imager network,” Advanced Photonics Nexus (2025)

DOI: 10.1117/1.APN.4.5.056002

: Y. Zhang, L. Huang, N. Pillar, Y. Li, Y. Li, L.G. Migas, R. Van de Plas, J.M. Spraggins, and A. Ozcan, “Virtual Staining of Label-Free Tissue in Imaging Mass Spectrometry,” Science Advances (AAAS) (2025)

DOI: 10.1126/sciadv.adv0741

: M.S.S. Rahman, T. Gan, M. Jarrahi, and A. Ozcan, “Programming of refractive functions,” Nature Communications (2025)

DOI: 10.1038/s41467-025-62230-x

: Y. Li, N. Pillar, T. Liu, G. Ma, Y. Qi, K. de Haan, Y. Zhang, X. Yang, A.J. Correa, G. Xiao, K-Y. Jen, K.A. Iczkowski, Y. Wu, W.Dean Wallace, and A. Ozcan, “Label-Free Evaluation of Lung and Heart Transplant Biopsies Using Tissue Autofluorescence-Based Virtual Staining” BME Frontiers (AAAS) (2025)

DOI: 10.34133/bmef.0151

: Y. Zhou, A. Nakagawa, M. Sonoshita, G.J. Tearney, A. Ozcan, K. Goda, “Emergent Photonics for Cardiovascular Health,” Nature Photonics (2025)

DOI: 10.1038/s41566-025-01714-0

: L. Huang, Y. Li, N. Pillar, T.K. Haran, W.D. Wallace, A. Ozcan, “A robust and scalable framework for hallucination detection in virtual tissue staining and digital pathology,” Nature Biomedical Engineering (2025)

DOI: 10.1038/s41551-025-01421-9

: M.S.S. Rahman, and A. Ozcan, “Universal point spread function engineering for 3D optical information processing,” Light: Science & Applications (2025)

DOI: 10.1038/s41377-025-01887-x

: Y. Wang, Y. Li, T. Gan, K. Liao, M. Jarrahi, A. Ozcan, “Optimizing Structured Surfaces for Diffractive Waveguides,” Nature Communications (2025)

DOI: 10.1038/s41467-025-60626-3

: Y. Yao, M. Niu, H. Chen, Q. Yu, Q. Wu, Y. Li, Y. Zhang, A. Ozcan, M. Jerrett, Y. Zhu, “Fine particulate matter emissions from electric vehicle fast charging stations,” Environment International (2025)

DOI: 10.1016/j.envint.2025.109581

: Y. Zhang, L. Huang, N. Pillar, Y. Li, H. Chen, A. Ozcan, “Pixel super-resolved virtual staining of label-free tissue using diffusion models,” Nature Communications (2025)

DOI: 10.1038/s41467-025-60387-z

: J. Jeon, H. Choi, G-R. Han, R. Ghosh, B. Palanisamy, D. Di Carlo, A. Ozcan, S. Park, “Paper-based vertical flow assays for in vitro diagnostics and environmental monitoring,” ACS Sensors (2025)

DOI: 10.1021/acssensors.5c00668

: Y. Li, H. Li, W. Chen, K. O’Riordan, N. Mani, Y. Qi, T. Liu, S. Mani, and A. Ozcan, “Deep Learning-based Detection of Bacterial Swarm Motion Using a Single Image,” Gut Microbes (2025)

DOI: 10.1080/19490976.2025.2505115

: G-R. Han, A. Goncharov, M. Eryilmaz, S. Ye, B. Palanisamy, R. Ghosh, F. Lisi, E. Rogers, D. Guzman, D. Yigci, S. Tasoglu, D. Di Carlo, K. Goda, R.A. McKendry and A. Ozcan, “Machine learning in point-of-care testing: innovations, challenges, and opportunities,” Nature Communications (2025)

DOI: 10.1038/s41467-025-58527-6

: Y. Li, T. Gan, J. Li, M. Jarrahi and A. Ozcan, “Unidirectional focusing of light using structured diffractive surfaces,” Advanced Optical Materials (2025)

DOI: 10.1002/adom.202403371

: G. Han, A. Goncharov, M. Eryilmaz, S. Ye, H. Joung, R. Ghosh, E. Ngo, A. Tomoeda, Y. Lee, K. Ngo, E. Melton, O.B. Garner, D. Di Carlo and A. Ozcan, “Deep Learning-Enhanced Chemiluminescence Vertical Flow Assay for High-Sensitivity Cardiac Troponin I Testing,” Small (2025)

DOI: 10.1002/smll.202411585

: Ç. Işıl, H. Ceylan Koydemir, M. Eryilmaz, K. de Haan, N. Pillar, K. Mentesoglu, A. Firat Unal, Y. Rivenson, S. Chandrasekaran, O.B. Garner and A. Ozcan, “Virtual Gram staining of label-free bacteria using darkfield microscopy and deep learning,” Science Advances (AAAS) (2025)

DOI: 10.1126/sciadv.ads2757

: R. Pradhan, D. Chimene, B.S. Ko, A. Goncharov, A. Ozcan, M.J. McShane, “Insertable Biomaterial-Based Multianalyte Barcode Sensor toward Continuous Monitoring of Glucose and Oxygen,” ACS Sensors (2024)

DOI: 10.1021/acssensors.4c01926

: M.S.S. Rahman, and A. Ozcan, “Physics and Artificial Intelligence: Illuminating the Future of Optics and Photonics,” Advanced Photonics (2024)

DOI: 10.1117/1.AP.6.5.050500

: G. Ma, C-Y. Shen, J. Li, L. Huang, Ç. Işıl, F.O. Ardic，X. Yang, Y. Li, Y. Wang, M.S.S. Rahman, and A. Ozcan, “Unidirectional imaging with partially coherent light,” Advanced Photonics Nexus (2024)

DOI: 10.1117/1.APN.3.6.066008

: J.D. FitzGerald, C. Barrios, T. Liu, A. Rosenthal, G.M. McCarthy, L. Chen, B. Bai, G. Ma, A. Ozcan, “A novel polarized light microscope for examination of birefringent crystals in synovial fluid,” Gout, Urate, and Crystal Deposition Disease (2024)

DOI: 10.3390/gucdd2040022

: G-R. Han, A. Goncharov, M. Eryilmaz, H-A. Joung, R. Ghosh, G. Yim, N. Chang, M. Kim, K. Ngo, M. Veszpremi, K. Liao, O. Garner, D. Di Carlo, A. Ozcan, “Deep learning-enhanced paper-based vertical flow assay for high-sensitivity troponin detection using nanoparticle amplification,” ACS Nano (2024)

DOI: 10.1021/acsnano.4c05153

: Y. Ma, L. Huang, C. Sen, S. Burri, C. Bruschini, X. Yang, R.B. Cameron, G.A. Fishbein, B.N. Gomperts, A. Ozcan, E. Charbon, L. Gao, “Light-field tomographic fluorescence lifetime imaging microscopy,” Proceedings of the National Academy of Sciences (PNAS) (2024)

DOI: 10.1073/pnas.2402556121

: X. Yang, B. Bai, Y. Zhang, M. Aydin, Y. Li, S.Y. Selcuk, P.C. Costa, Z. Guo, G.A. Fishbein, K. Atlan, W. Dean Wallace, N. Pillar, A. Ozcan, “Virtual birefringence imaging and histological staining of amyloid deposits in label-free tissue using autofluorescence microscopy and deep learning,” Nature Communications (2024)

DOI: 10.1038/s41467-024-52263-z

: M. Fanous, P. Casteleiro Costa, C. Isil, L. Huang, A. Ozcan, “Neural Network-Based Processing and Reconstruction of Compromised Biophotonic Image Data,” Light: Science & Applications (2024)

DOI: 10.1038/s41377-024-01544-9

: J. Rosen, et al., “Roadmap on computational methods in optical imaging and holography,” Applied Physics B (2024)

DOI: 10.1007/s00340-024-08280-3

: H-J. Jang, H-A. Joung, A. Goncharov, A.G. Kanegusuku, C.W. Chan, K-T. Jerry Yeo, W. Zhuang, A. Ozcan, J. Chen, “Deep Learning-based Kinetic Analysis in Paper-based Analytical Cartridges Integrated with Field-effect Transistors,” ACS Nano (2024)

DOI: 10.1021/acsnano.4c02897

: R. Ghosh, H. Joung, A. Goncharov, B. Palanisamy, K. Ngo, K. Pejcinovic, N. Krockenberger, E. Horn, O. Garner, E. Ghazal, A. O’Kula, P. Arnaboldi, R. Dattwyler, A. Ozcan, D. Di Carlo, “Rapid single-tier serodiagnosis of Lyme disease,” Nature Communications (2024)

DOI: 10.1038/s41467-024-51067-5

: A. Goncharov, Z. Gorocs, R. Pradhan, B. Ko, A. Ajmal, A. Rodriguez, D. Baum, M. Veszpremi, X. Yang, M. Pindrys, T. Zheng, O. Wang, J.C. Ramella-Roman, M.J. McShane, A. Ozcan, “An insertable glucose sensor using a compact and cost-effective phosphorescence lifetime imager and machine learning,” ACS Nano (2024)

DOI: 10.1021/acsnano.4c06527

: M.S.S. Rahman, and A. Ozcan, “Integration of Programmable Diffraction with Digital Neural Networks,” ACS Photonics (2024)

DOI: 10.1021/acsphotonics.4c01099

: D. Yigci, M. Eryilmaz, A.K. Yetisen, S. Tasoglu, A. Ozcan, “Large Language Model-Based Chatbots in Higher Education,” Advanced Intelligent Systems (2024)

DOI: 10.1002/aisy.202400429

: B. Bai, X. Yang, T. Gan, J. Li, D. Mengu, M. Jarrahi, A. Ozcan, “Pyramid diffractive optical networks for unidirectional image magnification and demagnification,” Light: Science & Applications (2024)

DOI: 10.1038/s41377-024-01543-w

: C-Y. Shen, J. Li, Y. Li, T. Gan, L. Bai, M. Jarrahi, A. Ozcan, “Multiplane Quantitative Phase Imaging Using a Wavelength-Multiplexed Diffractive Optical Processor,” Advanced Photonics (2024)

DOI: 10.1117/1.AP.6.5.056003

: Y. Li, J. Li, A. Ozcan, “Nonlinear Encoding in Diffractive Information Processing Using Linear Optical Materials,” Light: Science & Applications (2024)

DOI: 10.1038/s41377-024-01529-8

: S.Y. Selcuk, X. Yang, B. Bai, Y. Zhang, Y. Li, M. Aydin, A. F. Unal, A. Gomatam, Z. Guo, D. M. Angus, G. Kolodney, K. Atlan, T. K. Haran, N. Pillar, and A. Ozcan, “Automated HER2 Scoring in Breast Cancer Images Using Deep Learning and Pyramid Sampling,” BME Frontiers (2024)

DOI: 10.34133/bmef.0048

: G. Ma, X. Yang, B. Bai, J. Li, Y. Li, T. Gan, C-Y. Shen, Y. Zhang, Y. Li, Ç. Işıl, M. Jarrahi, A. Ozcan, “Multiplexed all-optical permutation operations using a reconfigurable diffractive optical network,” Laser & Photonics Reviews (2024)

DOI: 10.1002/lpor.202400238

: M. Eryilmaz, A. Goncharov, G. Han, H. Joung, Z.S. Ballard, R. Ghosh, Y. Zhang, D. Di Carlo, A. Ozcan, “A paper-based multiplexed serological test to monitor immunity against SARS-CoV-2 using machine learning,” ACS Nano (2024)

DOI: 10.1021/acsnano.4c02434

: J. Hu, K. Liao, N.U. Dinc, C. Gigli, B. Bai, T. Gan, X. Li, H. Chen, X. Yang, Y. Li, Ç. Işıl, M.S.S. Rahman, J. Li, X. Hu, M. Jarrahi, D. Psaltis, A. Ozcan, “Subwavelength Imaging using a Solid-Immersion Diffractive Optical Processor,” eLight (2024)

DOI: 10.1186/s43593-024-00067-5

: B. Bai, R. Lee, Y. Li, T. Gan, Y. Wang, M. Jarrahi, A. Ozcan, “Information hiding cameras: optical concealment of object information into ordinary images,” Science Advances (2024)

DOI: 10.1126/sciadv.adn9420

: C-Y. Shen, J. Li, T. Gan,Y. Li, M. Jarrahi, A. Ozcan, “All-optical phase conjugation using diffractive wavefront processing,” Nature Communications (2024)

DOI: 10.1038/s41467-024-49304-y

: J. Li, Y. Li, T. Gan, C-Y. Shen, M. Jarrahi, A. Ozcan, “All-optical complex field imaging using diffractive processors,” Light: Science & Applications (2024)

DOI: 10.1038/s41377-024-01482-6

: D. Yigci, J. Bonventre, A. Ozcan, S. Tasoglu, “Repurposing Sewage and Toilet Systems: Environmental, Public Health, and Person-Centered Healthcare Applications,” Global Challenges (2024)

DOI: 10.1002/gch2.202300358

: N. Chaturvedi, A. Goncharov, S. Tripathy, A. Michelle T.S. Juan, S.B. Mabbott, A. Ozcan, F.S. Ligler, G.L. Coté, “Advances in point-of-care optical biosensing for underserved populations,” Trends in Analytical Chemistry (2024)

DOI: 10.1016/j.trac.2024.117731

: D. Zhang, D. Xu, Y. Li, Y. Luo, J. Hu, J. Zhou, Y. Zhang, B. Zhou, P. Wang, X. Li, B. Bai, H. Ren, L. Wang, A. Zhang, M. Jarrahi, Y. Huang, A. Ozcan, and X. Duan, “Broadband nonlinear modulation of incoherent light using a transparent optoelectronic neuron array,” Nature Communications (2024)

DOI: 10.1038/s41467-024-46387-5

: Y. Li, N. Pillar, J. Li, T. Liu, D. Wu, S. Sun, G. Ma, K. de Haan, L. Huang, Y. Zhang, S. Hamidi, A. Urisman, T.K. Haran, W.D. Wallace, J.E. Zuckerman, and A. Ozcan, “Virtual histological staining of unlabeled autopsy tissue,” Nature Communications (2024)

DOI: 10.1038/s41467-024-46077-2

: J. Hu, D. Mengu, D.C. Tzarouchis, B. Edwards, N. Engheta and A. Ozcan, “Diffractive Optical Computing in Free Space,” Nature Communications (2024)

DOI: 10.1038/s41467-024-45982-w

: N. Pillar, Y. Li, Y. Zhang, and A. Ozcan, “Virtual Staining of Non-Fixed Tissue Histology,” Modern Pathology (2024)

DOI: 10.1016/j.modpat.2024.100444

: Ç. Işıl, T. Gan, F.O. Ardic, K. Mentesoglu, J. Digani, H. Karaca, H. Chen, J. Li, D. Mengu, M. Jarrahi, K. Akşit, and A. Ozcan, “All-optical image denoising using a diffractive visual processor,” Light: Science & Applications (Nature Publishing Group) (2024)

DOI: 10.1038/s41377-024-01385-6

: M.S.S. Rahman, and A. Ozcan, “OAM-based diffractive all-optical classification,” Advanced Photonics (2024)

DOI: 10.1117/1.AP.6.1.010501

: X. Yang, M.S.S. Rahman, B. Bai, J. Li, and A. Ozcan, “Complex-valued universal linear transformations and image encryption using spatially incoherent diffractive networks,” Advanced Photonics Nexus (2024)

DOI: 10.1117/1.APN.3.1.016010

: X. Li, D. Mengu, N.T. Yardimci, D. Turan, A. Charkhesht A. Ozcan, and M. Jarrahi, “Plasmonic photoconductive terahertz focal-plane array with pixel super-resolution,” Nature Photonics (2024)

DOI:10.1038/s41566-023-01346-2

: L. Huang, J. Li, X. Ding, Y. Zhang, H. Chen and A. Ozcan, “Cycle Consistency-based Uncertainty Quantification of Neural Networks in Inverse Imaging Problems,” Intelligent Computing (AAAS) (2023)

DOI: 10.34133/icomputing.0071

: V.N. Astratov, et al., “Roadmap on Label-Free Super-Resolution Imaging,” Laser & Photonics Reviews (2023)

https://doi.org/10.1002/lpor.202200029

: S.S. Rahman, T. Gan, E.A. Deger, Ç. Işıl, M. Jarrahi and A. Ozcan, “Learning Diffractive Optical Communication Around Arbitrary Opaque Occlusions,” Nature Communications (2023)

DOI: 10.1038/s41467-023-42556-0

: J. Li, X. Li, N.T. Yardimci, J. Hu, Y. Li, J. Chen, Y. Hung, M. Jarrahi, and A. Ozcan, “Rapid Sensing of Hidden Objects and Defects using a Single-Pixel Diffractive Terahertz Sensor,” Nature Communications (2023)

DOI: 10.1038/s41467-023-42554-2

: J. Park, B. Bai, D. Ryu, T. Liu, C. Lee, Y. Luo, M. Jae Lee, L. Huang, J. Shin, Y. Zhang, D. Ryu, Y. Li, G. Kim, H. Min, A. Ozcan, and Y. Park, “Artificial intelligence-enabled Quantitative Phase Imaging Methods for Life Sciences,” Nature Methods (2023)

DOI: 10.1038/s41592-023-02041-4

: V. Shah, X. Yang, A. Arnheim, S. Udani, D. Tseng, Y. Luo, M. Ouyang, G. Destgeer, O. Garner, H.C. Koydemir, A. Ozcan, D. Di Carlo, “Amphiphilic particle-stabilized nanoliter droplet reactors with a multi-modal portable reader for distributive biomarker quantification,” ACS Nano (2023)

DOI: 10.1021/acsnano.3c04994

: X. Li, J. Li, Y. Li, A. Ozcan, M. Jarrahi, “High-throughput terahertz imaging: progress and challenges,” Light: Science & Applications (Nature Publishing Group) (2023)

DOI: s41377-023-01278-0

: Y. Li, T. Gan, B. Bai, Ç. Işıl, M. Jarrahi, and A. Ozcan, “Optical information transfer through random unknown diffusers using electronic encoding and diffractive decoding” Advanced Photonics (2023)

DOI: 10.1117/1.AP.5.4.046009

: Y. Li, J. Li, Y. Zhao, T. Gan, J. Hu, M. Jarrahi, A. Ozcan “Universal Polarization Transformations: Spatial programming of polarization scattering matrices using a deep learning-designed diffractive polarization transformer,” Advanced Materials (2023)

DOI: 10.1002/adma.202303395

: C-Y. Shen, J. Li, D. Mengu, and A. Ozcan “Multispectral Quantitative Phase Imaging Using a Diffractive Optical Network,” Advanced Intelligent Systems (2023)

DOI: 10.1002/aisy.202300300

: S.S. Rahman, X. Yang, J. Li, B. Bai, and A. Ozcan, “Universal Linear Intensity Transformations Using Spatially Incoherent Diffractive Processors,” Light: Science & Applications (2023)

DOI: 10.1038/s41377-023-01234-y

: L. Huang, H. Chen, T. Liu, and A. Ozcan, “Self-supervised learning of hologram reconstruction using physics consistency,” Nature Machine Intelligence (2023)

DOI: 10.1038/s42256-023-00704-7

: M.J. Fanous, N. Pillar, and A. Ozcan, “Digital Staining Facilitates Biomedical Microscopy,” Frontiers in Bioinformatics (2023)

DOI: 10.3389/fbinf.2023.1243663

: Y. Li, Y. Luo, D. Mengu, B. Bai, and A. Ozcan, “Quantitative phase imaging (QPI) through random diffusers using a diffractive optical network,” Light: Advanced Manufacturing (2023)

DOI: 10.37188/lam.2023.017

: M.J. Fanous, A. Ozcan, “In-flow holographic tomography boosts lipid droplet quantification,” Opto-Electronic Advances (2023)

DOI: 10.29026/oea.2023.230083

: T. Liu, Y. Li, H.C. Koydemir, Y. Zhang, E. Yang, M. Eryilmaz, H. Wang, J. Li, B. Bai, G. Ma, and A. Ozcan, “Rapid and stain-free quantification of viral plaque via lens-free holography and deep learning,” Nature Biomedical Engineering (2023)

DOI: 10.1038/s41551-023-01057-7

: J. Li, T. Gan, Y. Zhao, B. Bai, C-Y. Shen, S. Sun, M. Jarrahi and A. Ozcan, “Unidirectional Imaging using Deep Learning-Designed Materials,” Science Advances (AAAS) (2023)

DOI: 10.1126/sciadv.adg1505

: A. Goncharov, H-A. Joung, R. Ghosh, G-R. Han, Z.S. Ballard, Q. Maloney, A. Bell, C.T.Z. Aung, O.B. Garner, D. Di Carlo, and A. Ozcan, “Deep learning-enabled multiplexed point-of-care sensor using a paper-based fluorescence vertical flow assay,” Small (2023)

DOI: 10.1002/smll.202300617

: B. Bai, H. Wei, X. Yang, T. Gan, D. Mengu, M. Jarrahi, and A. Ozcan, “Data class-specific all-optical transformations and encryption,” Advanced Materials (2023)

DOI: 10.1002/adma.202212091

: D. Mengu, A. Tabassum, and M. Jarrahi and A. Ozcan, “Snapshot Multispectral Imaging Using a Diffractive Optical Network,” Light: Science & Applications (2023)

DOI: 10.1038/s41377-023-01135-0– PDF

: B. Bai, Y. Li, Y. Luo, X. Li, E. Cetintas, M. Jarrahi and A. Ozcan, “All-optical image classification through unknown random diffusers using a single-pixel diffractive network,” Light: Science & Applications (2023)

DOI: 10.1038/s41377-023-01116-3

: B. Bai, X. Yang, Y. Li, Y. Zhang, N. Pillar and A. Ozcan, “Deep Learning-enabled Virtual Histological Staining of Biological Samples,” Light: Science & Applications (2023)

DOI: 10.1038/s41377-023-01104-7

: H. Chen, L. Huang, T. Liu, and A. Ozcan, “eFIN: Enhanced Fourier Imager Network for Generalizable Autofocusing and Pixel Super-Resolution in Holographic Imaging,” IEEE Journal of Selected Topics in Quantum Electronics (2023)

DOI: 10.1109/JSTQE.2023.3248684

: S.S. Rahman, and A. Ozcan, “Time-lapse image classification using a diffractive neural network,” Advanced Intelligent Systems (2023)

DOI: 10.1002/aisy.202200387

: J. Budd, B. Miller, et al., “Lateral flow test engineering and lessons learned from COVID-19” Nature Reviews Bioengineering (2023)

DOI: 10.1038/s44222-022-00007-3

: J. Li, T. Gan, B. Bai, Y. Luo, M. Jarrahi, and A. Ozcan, “Massively Parallel Universal Linear Transformations using a Wavelength-Multiplexed Diffractive Optical Network,” Advanced Photonics (2023)

DOI: 10.1117/1.AP.5.1.016003– PDF

: C. Isıl, D. Mengu, Y. Zhao, A. Tabassum, J. Li, Y. Luo, M. Jarrahi and A. Ozcan, “Super-resolution image display using diffractive decoders,” Science Advances (2022)

DOI: 10.1126/sciadv.add3433

: N. Pillar and A. Ozcan, “Virtual tissue staining in pathology using machine learning,” Expert Review of Molecular Diagnostics (2022)

DOI: 10.1080/14737159.2022.2153040

: Y. Luo, Y. Zhang, T. Liu, A. Yu, Y. Wu, and A. Ozcan, “Virtual impactor-based label-free pollen detection using holography and deep learning,” ACS Sensors (2022)

DOI: 10.1021/acssensors.2c01890– PDF

: S. Belsare, D. Tseng, A. Ozcan, and G. Coté, “Monitoring gestational diabetes at the point-of-care via dual glycated albumin lateral flow assays in conjunction with a handheld reader,” Analyst (2022)

DOI: 10.1039/D2AN01238C– PDF

: Y. Zhang, L. Huang, T. Liu, K. Cheng, K. de Haan, Y. Li, B. Bai, and A. Ozcan, “Virtual staining of defocused autofluorescence images of unlabeled tissue using deep neural networks,” Intelligent Computing (AAAS) (2022)

DOI: 10.34133/2022/9818965

: B. Bai, H. Wang, Y. Li, K. de Haan, F. Colonnese, Y. Wan, J. Zuo, N.B. Doan, X. Zhang, Y. Zhang, J. Li, X. Yang, W. Dong, M. Angus Darrow, E. Kamangar, H. Sung Lee, Y. Rivenson, A. Ozcan, “Label-free virtual HER2 immunohistochemical staining of breast tissue using deep learning,” BME Frontiers (AAAS) (2022)

DOI: 10.34133/2022/9786242

: Y. Rivenson and A. Ozcan, “Deep learning accelerates whole slide imaging for next generation digital pathology applications,” Light: Science & Applications (Nature Publishing Group) (2022)

DOI:10.1038/s41377-022-00999-y

: D. Mengu, Y. Zhao, A. Tabassum, M. Jarrahi, and A. Ozcan, “Diffractive Interconnects: All-Optical Permutation Operation Using Diffractive Networks,” Nanophotonics (2022)

DOI: 10.1515/nanoph-2022-0358– PDF

: X. Yang, B. Bai, Y. Li, Y. Zhang, T. Liu, K. de Haan, and A. Ozcan, “Virtual stain transfer in histology via cascaded deep neural networks” ACS Photonics (2022)

DOI: 10.1021/acsphotonics.2c00932

: H. Chen, L. Huang, T. Liu and A. Ozcan, “Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization,” Light: Science & Applications (2022)

DOI: 10.1038/s41377-022-00949-8– PDF

: B. Bai, Y. Luo, T. Gan, J. Hu, Y. Li, Y. Zhao, D. Mengu, M. Jarrahi, and A. Ozcan, “To image, or not to image: Class-specific diffractive cameras with all-optical erasure of undesired objects,” eLight (2022)

DOI: 10.1186/s43593-022-00021-3 – PDF

: Y. Li, Y. Luo, B. Bai, and A. Ozcan, “Analysis of Diffractive Neural Networks for Seeing Through Random Diffusers,” IEEE Journal of Selected Topics in Quantum Electronics (IEEE JSTQE) (2022)

DOI: 10.1109/JSTQE.2022.3194574– PDF

: Y. Li, T. Liu, H.C. Koydemir, H. Wang, K. O’Riordan, B. Bai, Y. Haga, J. Kobashi, H. Tanaka, T. Tamaru, K. Yamaguchi, and A. Ozcan, “Deep Learning-enabled Detection and Classification of Bacterial Colonies Using a Thin Film Transistor (TFT) Image Sensor” ACS Photonics (2022)

DOI: 10.1021/acsphotonics.2c00572

: L. Huang, X. Yang, T. Liu, and A. Ozcan, “Few-shot Transfer Learning for Holographic Image Reconstruction using a Recurrent Neural Network” APL Photonics (2022)

DOI: 10.1063/5.0090582

: J. Li, Y. Hung, O. Kulce, D. Mengu and A. Ozcan, “Polarization Multiplexed Diffractive Computing: All-Optical Implementation of a Group of Linear Transformations Through a Polarization-Encoded Diffractive Network,” Light: Science & Applications (Nature Publishing Group) (2022)

DOI: 10.1038/s41377-022-00849-x– PDF

: D. Mengu and A. Ozcan, “All-optical phase recovery: diffractive computing for quantitative phase imaging” Advanced Optical Materials (2022)

DOI: 10.1002/adom.202200281– PDF

: D. Mengu, S.S. Rahman, Y. Luo, J. Li and A. Ozcan, “At the intersection of optics and deep learning: statistical inference, computing, and inverse design” Advances in Optics and Photonics (2022)

DOI: 10.1364/AOP.450345– PDF

: D. Mengu, M. Veli, Y. Rivenson and A. Ozcan, “Classification and reconstruction of spatially overlapping phase images using diffractive optical networks” Scientific Reports (2022)

DOI: 10.1038/s41598-022-12020-y

: Y. Luo, D. Mengu and A. Ozcan, “Cascadable all-optical NAND gates using diffractive networks” Scientific Reports (2022)

DOI: 10.1038/s41598-022-11331-4

: J. Leonard, H.C. Koydemir, V.S. Koutnik, D. Tseng, A. Ozcan, and S. Mohanty, “Smartphone-enabled rapid quantification of microplastics” Journal of Hazardous Materials Letters (2022)

DOI: 10.1016/j.hazl.2022.100052

: B.S. Miller, M.R. Thomas, M. Banner, J. Kim, Y. Chen, Q.Wei, D.K. Tseng, Z.S. Göröcs, A. Ozcan, M.M. Stevens, R.A. McKendry “Sub-picomolar lateral flow antigen detection with two-wavelength imaging of composite nanoparticles,” Biosensors and Bioelectronics (2022)

DOI: 10.1016/j.bios.2022.114133

: E. Cetintas, Y. Luo, C. Nguyen, Y. Guo, L. Li, Y. Zhu, A. Ozcan, “Characterization of exhaled e-cigarette aerosols in a vape shop using a field-portable holographic on-chip microscope,” Scientific Reports (2022)

DOI: 10.1038/s41598-022-07150-2

: Y. Luo, Y. Zhao, J. Li, E. Cetintas, Y. Rivenson, M. Jarrahi, A. Ozcan, “Computational Imaging Without a Computer: Seeing Through Random Diffusers at the Speed of Light,” eLight (2022)

DOI: 10.1186/s43593-022-00012-4 – PDF

: V.S. Koutnik, A. Borthakur, J. Leonard, S. Alkidim, H. Ceylan Koydemir, D. Tseng, A. Ozcan, S. Ravi, S.K. Mohanty, “Mobility of polypropylene microplastics in stormwater biofilters under freeze-thaw cycles” Journal of Hazardous Materials Letters (2022)

DOI: 10.1016/j.hazl.2022.100048

: V.S. Koutnik, J. Leonard, J.B. Glasman, H. Ceylan Koydemir, A. Novoselov, J. Brar, R. Bertel, D. Tseng, A. Ozcan, S. Ravi, S.K. Mohanty, “Microplastics retained in stormwater control measures: Where do they come from and where do they go?” Water Research (2021)

DOI: 10.1016/j.watres.2021.118008

: J. Li, J. Garfinkel, X. Zhang, D. Wu, Y. Zhang, K. de Haan, H. Wang, T. Liu, B. Bai, Y. Rivenson, G. Rubinstein, P. Scumpia and A. Ozcan, “Biopsy-free in vivo virtual histology of skin using deep learning,” Light: Science & Applications (Nature Publishing Group) (2021)

DOI: 10.1038/s41377-021-00674-8

: S.S. Rahman, and A. Ozcan, “Computer-free, all-optical reconstruction of holograms using diffractive networks,” ACS Photonics (2021)

DOI: 10.1021/acsphotonics.1c01365

: B. Javidi, et al., “Roadmap on Digital Holography,” Optics Express (2021)

DOI: 10.1364/OE.435915

: O. Kulce, D. Mengu, Y. Rivenson and A. Ozcan, “All-Optical Synthesis of an Arbitrary Linear Transformation Using Diffractive Surfaces,” Light: Science & Applications (Nature Publishing Group) (2021)

DOI: 10.1038/s41377-021-00623-5

: J. Hambalek, J. Kong, C. Brown, H. Munoz, T. Horn, M. Bogumil, E. Quick, A. Ozcan, and D. Di Carlo, “Methylation Sensitive LAMP: Nucleic Acid Methylation Detection Through Loop-Mediated Isothermal Amplification with Mobile Fluorescence Readout,” ACS Sensors (2021)

DOI: 10.1021/acssensors.1c00902

: J.R. Bobe, B.L. Jutras, E.J. Horn, M.E. Embers, A. Bailey, R.L. Moritz, Y. Zhang, M.J. Soloski, R.S. Ostfeld, R.T. Marconi, J. Aucott, A. Ma’ayan, F. Keesing, K. Lewis, C.B. Mamoun, A.W. Rebman, M.E. McClune, E.B. Breitschwerdt, P.J. Reddy, R. Maggi, F. Yang, B. Nemser, A. Ozcan, O. Garner, D. Di Carlo, Z. Ballard, H-A. Joung, A. Garcia-Romeu, R.R. Griffiths, N. Baumgarth and B.A. Fallon, “Recent Progress in Lyme Disease and Remaining Challenges,” Frontiers in Medicine (2021)

DOI: 10.3389/fmed.2021.666554

: K. de Haan, Y. Zhang, J.E. Zuckerman, T. Liu, A.E. Sisk, M.F.P. Diaz, K. Jen, A. Nobori, S. Liou, S. Zhang, R. Riahi, Y. Rivenson, W.D. Wallace, and A. Ozcan, “Deep learning-based transformation of H&E stained tissues into special stains,” Nature Communications (2021)

DOI: 10.1038/s41467-021-25221-2 – PDF

: Y. Zhang, T. Liu, M. Singh, E. Çetintaş, Y. Luo, Y. Rivenson, K.V. Larin, and A. Ozcan, “Neural network-based image reconstruction in swept-source optical coherence tomography using undersampled spectral data,” Light: Science & Applications (Nature Publishing Group) (2021)

DOI: 10.1038/s41377-021-00594-7

: Y. Luo, H. Joung, S. Esparza, J. Rao, O. Garner, and A. Ozcan “Quantitative particle agglutination assay for point-of-care testing using mobile holographic imaging and deep learning,” Lab on a Chip (2021)

DOI: 10.1039/D1LC00467K – arXiv

: Z. Ballard, C. Brown, A.M. Madni, and A. Ozcan, “Machine learning and computation enabled intelligent sensor designs,” Nature Machine Intelligence (2021)

DOI: 10.1038/s42256-021-00360-9

: X. Yang, L. Huang, Y. Luo, Y. Wu, H. Wang, Y. Rivenson, and A. Ozcan, “Deep-learning-based virtual refocusing of images using an engineered point-spread function,” ACS Photonics (2021)

DOI: 10.1021/acsphotonics.1c00660

: Y. Luo, Y. Wu, L. Li, Y. Guo, E. Cetintas, Y. Zhu, and A. Ozcan, “Dynamic Imaging and Characterization of Volatile Aerosols in E-Cigarette Emissions Using Deep Learning-Based Holographic Microscopy,” ACS Sensors (2021)

DOI: 10.1021/acssensors.1c00628

: L. Huang, T. Liu, X. Yang, T. Luo, Y. Rivenson, and A. Ozcan, “Holographic image reconstruction with phase recovery and autofocusing using recurrent neural networks,” ACS Photonics (2021)

DOI: 10.1021/acsphotonics.1c00337

: J. Li, D. Mengu, N.T. Yardimci, Y. Luo, X. Li, M. Veli, Y. Rivenson, M. Jarrahi and A. Ozcan, “Spectrally-Encoded Single-Pixel Machine Vision Using Diffractive Networks,” Science Advances (2021)

10.1126/sciadv.abd7690 – PDF

: L. Huang, H. Chen, Y. Luo, Y. Rivenson and A. Ozcan, “Recurrent neural network-based volumetric fluorescence microscopy,” Light: Science & Applications (Nature Publishing Group) (2021)

DOI: 10.1038/s41377-021-00506-9

: Ç. Işıl, K. de Haan, Z. Gӧrӧcs, H. Ceylan Koydemir, S. Peterman, D. Baum, F. Song, T. Skandakumar, E. Gumustekin, and A. Ozcan, “Phenotypic analysis of microalgae populations using label-free imaging flow cytometry and deep learning,” ACS Photonics (2021)

DOI: 10.1021/acsphotonics.1c00220 – PDF

: K. Trofymchuk, V. Glembockyte, L. Grabenhorst, F. Steiner, C. Vietz, C. Close, M. Pfeiffer, L. Richter, M.L. Schütte, F. Selbach, R. Yaadav, J. Zähringer, Q. Wei, A. Ozcan, B. Lalkens, G.P. Acuna, and P. Tinnefeld, “Addressable Nanoantennas with Cleared Hotspots for Single-Molecule Detection on a Portable Smartphone Microscope,” Nature Communications (2021)

DOI: 10.1038/s41467-021-21238-9

: C. Brown, A. Goncharov, Z. Ballard, M. Fordham, A. Clemens, Y. Qiu, Y. Rivenson, A. Ozcan, “Neural Network-Based On-Chip Spectroscopy Using a Scalable Plasmonic Encoder,” ACS Nano (2021)

DOI: 10.1021/acsnano.1c00079 – PDF

: O. Kulce, D. Mengu, Y. Rivenson and A. Ozcan, “All-Optical Information Processing Capacity of Diffractive Surfaces,” Light: Science & Applications (Nature Publishing Group) (2021)

DOI: 10.1038/s41377-020-00439-9 – PDF

: Y. Luo, L. Huang, Y. Rivenson, and A. Ozcan, “Single-shot autofocusing of microscopy images using deep learning,” ACS Photonics (2021)

DOI: 10.1021/acsphotonics.0c01774 – PDF

: S.S. Rahman, J. Li, D. Mengu, Yair Rivenson, and A. Ozcan, “Ensemble learning of diffractive optical networks,” Light: Science & Applications (Nature Publishing Group) (2021)

DOI: 10.1038/s41377-020-00446-w

: M. Zell, T. Aung, M. Kaldas, A.K. Rosenthal, B. Bai, T. Liu, A. Ozcan, and J.D. FitzGerald, “Calcium pyrophosphate crystal size and characteristics,” Osteoarthritis and Cartilage Open (2021)

DOI: 10.1016/j.ocarto.2020.100133

: M. Veli, D. Mengu, N.T. Yardimci, Y. Luo, J. Li, Y. Rivenson, M. Jarrahi, and A. Ozcan, “Terahertz Pulse Shaping Using Diffractive Surfaces,” Nature Communications (2021)

DOI: 10.1038/s41467-020-20268-z – PDF

: D. Mengu, Y. Rivenson, and A. Ozcan, “Scale-, shift- and rotation-invariant diffractive optical networks,” ACS Photonics (2020)

DOI: 10.1021/acsphotonics.0c01583 – PDF

: G. Wetzstein, A. Ozcan, S. Gigan, S. Fan, D. Englund, M. Soljačić, C. Denz, D.A.B. Miller, and D. Psaltis, “Inference in artificial intelligence with deep optics and photonics,” Nature (2020)

DOI:10.1038/s41586-020-2973-6 – PDF

: T. Liu, K. de Haan, B. Bai, Y. Rivenson, Y. Luo, H. Wang, D. Karalli, H. Fu, Y. Zhang, J. FitzGerald, and A. Ozcan, “Deep learning-based holographic polarization microscopy,” ACS Photonics (2020)

DOI: 10.1021/acsphotonics.0c01051

: Y. Rivenson, K. de Haan, W.D. Wallace, A. Ozcan, “Emerging advances to transform histopathology using virtual staining,” BME Frontiers (2020)

DOI: 10.34133/2020/9647163 – PDF

: F. Ghaderinezhad, H.C. Koydemir, D. Tseng, D. Karinca, K. Liang, A. Ozcan, and S. Tasoglu, “Sensing of electrolytes in urine using a miniaturized paper-based device,” Scientific Reports (2020)

DOI: 10.1038/s41598-020-70456-6

: Z. Gӧrӧcs, D. Baum, F. Song, K. DeHaan, H.C. Koydemir, Y. Qiu, Z. Cai, T. Skandakumar, S. Peterman, M. Tamamitsu, and A. Ozcan, “Label-free detection of Giardia lamblia cysts using a deep learning-enabled portable imaging flow cytometer,” Lab on a Chip (2020)

DOI: 10.1039/D0LC00708K

: C. Brown, D. Tseng, P. Larkin, S. Realegeno, L. Mortimer, A. Subramonian, D. Di Carlo, O. Garner, and A. Ozcan, “An Automated, Cost-Effective Optical System for Accelerated Antimicrobial Susceptibility Testing (AST) using Deep Learning,” ACS Photonics (2020)

DOI: 10.1021/acsphotonics.0c00841

: H. Wang, H.C. Koydemir, Y. Qiu, B. Bai, Y. Zhang, Y. Jin, S. Tok, E.C. Yilmaz, E. Gumustekin, Y. Rivenson, and A. Ozcan, “Early-detection and classification of live bacteria using time-lapse coherent imaging and deep learning,” Light: Science & Applications (Nature Publishing Group) (2020)

DOI: 10.1038/s41377-020-00358-9 – PDF

: D. Mengu, Y. Zhao, N.T. Yardimci, Y. Rivenson, M. Jarrahi, and A. Ozcan, “Misalignment Resilient Diffractive Optical Networks,” Nanophotonics (2020)

DOI: 10.1515/nanoph-2020-0291 – PDF

: K. de Haan, H.C. Koydemir, Y. Rivenson, D. Tseng, E. Van Dyne, L.S. Bakic, D. Karinca, K. Liang, M. Ilango, E. Gumustekin, and A. Ozcan, “Automated screening of sickle cells using a smartphone-based microscope and deep learning,” npj Digital Medicine (2020)

DOI: 10.1038/s41746-020-0282-y

: Z. Ballard, H. Joung, A. Goncharov, J. Liang, K. Nugroho, D. Di Carlo, O. Garner, and A. Ozcan, “Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors,” npj Digital Medicine (2020)

DOI: 10.1038/s41746-020-0274-y

: Y. Zhang, K. de Haan, Y. Rivenson, J. Li, A. Delis, and A. Ozcan, “Digital synthesis of histological stains using micro-structured and multiplexed virtual staining of label-free tissue,” Light: Science & Applications (Nature Publishing Group) (2020)

DOI: 10.1038/s41377-020-0315-y

: Z. Ballard, S. Bazargan, D. Jung, S. Sathianathan, A. Clemens, D. Shir, S. Al-Hashimi, and A. Ozcan, “Contact lens-based lysozyme detection in tear using a mobile sensor,” Lab on a Chip (2020)

DOI: 10.1039/C9LC01039D

: A. Ray, M.A. Khalid, A. Demčenko, M. Daloglu, D. Tseng, J. Reboud, J.M. Cooper and A. Ozcan, “Holographic Detection of Nanoparticles using Acoustically Actuated Nanolenses,” Nature Communications (2020)

DOI: 10.1038/s41467-019-13802-1

: H. Munoz, C. Riche, J. Kong, M. van Zee, O. Garner, A. Ozcan, D. Di Carlo, “Fractal-LAMP: Label-free analysis of fractal precipitate for digital loop-mediated isothermal nucleic acid amplification,” ACS Sensors (2020)

DOI: 10.1021/acssensors.9b01974

: A. Ray, S. Esparza, D. Wu, M.R. Hanudel, H. Joung, B. Gales, D. Tseng, I.B. Salusky, and A. Ozcan, “Measurement of Serum Phosphate Levels Using a Mobile Sensor,” Analyst (2020)

DOI: 10.1039/C9AN02215E

: H.C. Koydemir, S. Rajpal, E. Gumustekin, D. Karinca, K. Liang, Z. Gorocs, D. Tseng, and A. Ozcan, “Smartphone-based turbidity reader,” Scientific Reports (2019)

DOI: 10.1038/s41598-019-56474-z

: H. Joung, Z. Ballard, J. Wu, D. Tseng, H. Teshome, L. Zhang, E. Horn, P. Arnaboldi, R. Dattwyler, O.B. Garner, D. Di Carlo, and A. Ozcan, “Point-of-Care Serodiagnostic Test for Early-Stage Lyme Disease Using a Multiplexed Paper-Based Immunoassay and Machine Learning,” ACS Nano (2019)

DOI: 10.1021/acsnano.9b08151

: Y. Luo, D. Mengu, N.T. Yardimci, Y. Rivenson, M. Veli, M. Jarrahi and A. Ozcan, “Design of task-specific optical systems using broadband diffractive neural networks,” Light: Science & Applications (Nature Publishing Group) (2019)

DOI: 10.1038/s41377-019-0223-1 – PDF

: K. de Haan, Y. Rivenson, Y. Wu, and A. Ozcan, “Deep learning-based image reconstruction and enhancement in optical microscopy,” Proceedings of the IEEE (2019)

DOI: 10.1109/JPROC.2019.2949575 – PDF

: Y. Wu, Y. Rivenson, H. Wang, Y. Luo, E. Ben-David, L.A. Bentolila, C. Pritz and A. Ozcan, “Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning,” Nature Methods (2019)

DOI: 10.1038/s41592-019-0622-5 – PDF

: Y. Zhang, M. Ouyang, A. Ray, T. Liu, J. Kong, B. Bai, D. Kim, A. Guziak, Y. Luo, A. Feizi, K. Tsai, Z. Duan, X. Liu, D.H. Kim, C. Cheung, S. Yalcin, H. Ceylan Koydemir, O. Garner, D. Di Carlo, and A. Ozcan, “Computational cytometer based on magnetically-modulated coherent imaging and deep learning,” Light: Science & Applications (Nature Publishing Group) (2019)

DOI: 10.1038/s41377-019-0203-5

: Y. Rivenson, Y. Wu, and A. Ozcan, “Deep Learning in Holography and Coherent Imaging,” Light: Science & Applications (Nature Publishing Group) (2019)

DOI: 10.1038/s41377-019-0196-0

: M.A. Khalid, A. Ray, S. Cohen, M. Tassieri, D. Andriejus, D. Tseng, J. Reboud, A. Ozcan, and J. Cooper, “Computational Image Analysis of Guided Acoustic Waves Enables Rheological Assessment of Sub-Nanoliter Samples,” ACS Nano (2019)

DOI: 10.1021/acsnano.9b03219

: B. Bai, H. Wang, T. Liu, Y. Rivenson, J. FitzGerald, and A. Ozcan, “Pathological crystal imaging with single-shot computational polarized light microscopy,” Journal of Biophotonics (2019)

DOI: 10.1002/jbio.201960036

: K. de Haan, Z.S. Ballard, Y. Rivenson, Y. Wu, and A. Ozcan, “Resolution enhancement in scanning electron microscopy using deep learning,” Scientific Reports (2019)

DOI: 10.1038/s41598-019-48444-2

: G. Barbastathis, A. Ozcan and G. Situ, “On the use of Deep Learning for Computational Imaging,” Optica (2019)

DOI: 10.1364/OPTICA.6.000921

: T. Liu, Z. Wei, Y. Rivenson, K. de Haan, Y. Zhang, Y. Wu, and A. Ozcan, “Deep learning-based color holographic microscopy,” Journal of Biophotonics (2019)

DOI:10.1002/jbio.201900107

: S. Tok, K. de Haan, D. Tseng, C.F. Usanmaz, H.C. Koydemir, and A. Ozcan, “Early detection of E. coli and total coliform using an automated, colorimetric and fluorometric fiber optics-based device,” Lab on a Chip (2019)

DOI: 10.1039/C9LC00652D

: J. Li, D. Mengu, Y. Luo, Y. Rivenson, A. Ozcan, “Class-specific Differential Detection in Diffractive Optical Neural Networks Improves Inference Accuracy,” Advanced Photonics (2019)

DOI: 10.1117/1.AP.1.4.046001 – arXiv:1906.03417

: D. Mengu, Y. Luo, Y. Rivenson, A. Ozcan, “Analysis of Diffractive Optical Neural Networks and Their Integration with Electronic Neural Networks,” IEEE Journal of Selected Topics in Quantum Electronics (2019)

DOI: 10.1109/JSTQE.2019.2921376 – arXiv:1810.01916 – PDF

: T. Ghonge, H. Ceylan Koydemir, E. Valera, J. Berger, C. Garcia, N. Nawar, J. Tiao, G. Damhorst, A. Ganguli, U. Hassan, A. Ozcan, R. Bashir, “Smartphone-Imaged Microfluidic Biochip for Measuring CD64 Expression from Whole Blood,” Analyst (2019)

DOI: 10.1039/C9AN00532C – PDF

: T. Liu, K. de Haan, Y. Rivenson, Z. Wei, X. Zeng, Y. Zhang, and A. Ozcan, “Deep learning-based super-resolution in coherent imaging systems,” Scientific Reports (2019)

DOI: 10.1038/s41598-019-40554-1 – arXiv:1810.06611 – PDF

: Y. Wu, Y. Luo, G. Chaudhari, Y. Rivenson, A. Calis, K. de Haan, and A. Ozcan, “Bright-field holography: Cross-modality deep learning enables snapshot 3D imaging with bright-field contrast using a single hologram,” Light: Science & Applications (Nature Publishing Group) (2019)

DOI: 10.1038/s41377-019-0139-9 – PDF

: Y. Rivenson, T. Liu, Z. Wei, Y. Zhang, K. de Haan, and A. Ozcan, “PhaseStain: The digital staining of label-free quantitative phase microscopy images using deep learning,” Light: Science & Applications (Nature Publishing Group) (2019)

DOI: 10.1038/s41377-019-0129-y – PDF

: Y. Rivenson, H. Wang, Z. Wei, K. de Haan, Y. Zhang, Y. Wu, H. Günaydın, J.E. Zuckerman, T. Chong, A.E. Sisk, L. M. Westbrook, W.D. Wallace, and A. Ozcan, “Virtual histological staining of unlabelled tissue-autofluorescence images via deep learning,” Nature Biomedical Engineering (2019)

DOI: 10.1038/s41551-019-0362-y – arXiv:1803.11293 – PDF

: M.U. Daloglu, A. Ray, M.J. Collazo, C. Brown, D. Tseng, B. Chocarro-Ruiz, L.M. Lechuga, D. Cascio and A.Ozcan, “Low-cost and portable UV holographic microscope for high-contrast protein crystal imaging,” APL Photonics (2019)

DOI: 10.1063/1.5080158 – PDF

: H. Joung, Z.S. Ballard, A. Ma, D.K. Tseng, H. Teshome, S. Burakowski, O.B. Garner, D. Di Carlo, A. Ozcan, “Paper-based multiplexed vertical flow assay for point-of-care testing,” Lab on a Chip (2019)

DOI: 10.1039/C9LC00011A – PDF

: J.W. Snow, H.C. Koydemir, D.K. Karinca, K. Liang, D. Tseng, A. Ozcan, “Rapid imaging, detection, and quantification of Nosema ceranae spores in honey bees using mobile phone-based fluorescence microscopy,” Lab on a Chip (2019)

DOI: 10.1039/C8LC01342J – PDF

: C. Vietz, M.L. Schütte, Q. Wei, L. Richter, B. Lalkens, A. Ozcan, P. Tinnefeld and G.P. Acuna, “Benchmarking Smartphone Based Microscopy with DNA Origami Nanobeads: Reducing the Gap Towards Single Molecule Sensitivity,” ACS Omega (2019)

DOI: 10.1021/acsomega.8b03136 – PDF

: H. Wang, Y. Rivenson, Y. Jin, Z. Wei, R. Gao, H. Gunaydin, L. Bentolila, and A. Ozcan, “Deep learning achieves super-resolution in fluorescence microscopy,” Nature Methods (2018)

bioRxiv 309641 – DOI: 10.1038/s41592-018-0239-0 – PDF

: Y. Wu, A. Ray, Q. Wei, A. Feizi, X. Tong, E. Chen, Y. Luo, and A. Ozcan, “Deep learning enables high-throughput analysis of particle-aggregation-based bio-sensors imaged using holography,” ACS Photonics (2018)

DOI: 10.1021/acsphotonics.8b01479

: Y. Zhang, H.C. Koydemir, M.M. Shimogawa, S. Yalcin, A. Guziak, T. Liu, I. Oguz, Y. Huang, B. Bai, Y. Luo, Y. Luo, Z. Wei, H. Wang, V. Bianco, B. Zhang, R. Nadkarni, K. Hill, and A. Ozcan, “Motility-based label-free detection of parasites in bodily fluids using holographic speckle analysis and deep learning,” Light: Science & Applications (Nature Publishing Group) (2018)

DOI: 10.1038/s41377-018-0110-1 – PDF

: H.C. Koydemir, J.T. Coulibaly, D. Tseng, I.I. Bogoch, A. Ozcan, “Design and Validation of a Wide-Field Mobile Phone Microscope for the Diagnosis of Schistosomiasis” Travel Medicine and Infectious Disease (2018)

DOI: 10.1016/j.tmaid.2018.12.001

: Y. Zhang, T. Liu, Y. Huang, D. Teng, Y. Bian, Y. Wu, Y. Rivenson, A. Feizi, and A. Ozcan, “Accurate color imaging of pathology slides using holography and absorbance spectrum estimation of histochemical stains,” Journal of Biophotonics (2018)

DOI: 10.1002/jbio.201800335

: V. Müller, J.M. Sousa, H.C. Koydemir, M. Veli, D. Tseng, L. Cerqueira, A. Ozcan, N.F. Azevedo, F. Westerlund, “Identification of Pathogenic Bacteria in Complex Samples Using a Smartphone Based Fluorescence Microscope,” RSC Advances (2018)

DOI: 10.1039/c8ra06473c – PDF

: Y. Bian, Y. Zhang, P. Yin, H. Li, and A. Ozcan, “Optical refractometry using lensless holography and autofocusing,” Optics Express (2018)

DOI: 10.1364/OE.26.029614

: M.U. Daloglu, F. Lin, B. Chong, D. Chien, M. Veli, W. Luo, and A. Ozcan, “3D imaging of sex-sorted bovine spermatozoon locomotion, head spin and flagellum beating,” Scientific Reports (2018)

DOI:10.1038/s41598-018-34040-3

: Y. Wu, A. Calis, Y. Luo, C. Chen, M. Lutton, Y. Rivenson, X. Lin, H.C. Koydemir, Y. Zhang, H. Wang, Z. Göröcs, and A. Ozcan, “Label-free bio-aerosol sensing using mobile microscopy and deep learning,” ACS Photonics (2018)

DOI: 10.1021/acsphotonics.8b01109 – PDF

: Z. Ballard, and A. Ozcan, “Nucleic acid quantification in the field,” Nature Biomedical Engineering (2018)

DOI: 10.1038/s41551-018-0292-0 – PDF

: Z. Gӧrӧcs, M. Tamamitsu, V. Bianco, P. Wolf, S. Roy, K. Shindo, K. Yanny, Y. Wu, H.C. Koydemir, Y. Rivenson, and A. Ozcan, “A deep learning-enabled portable imaging flow cytometer for cost-effective, high-throughput and label-free analysis of natural water samples,” Light: Science & Applications (Nature Publishing Group) (2018)

DOI: 10.1038/s41377-018-0067-0 – PDF

: X. Lin, Y. Rivenson, N.T. Yardimci, M. Veli, Y. Luo, M. Jarrahi and A. Ozcan, “All-Optical Machine Learning Using Diffractive Deep Neural Networks,” Science (2018)

DOI: 10.1126/science.aat8084 – PDF

: I. Hernández-Neuta, F. Neumann, J. Brightmeyer, T. Ba Tis, N. Madaboosi, Q. Wei, A. Ozcan and M. Nilsson, “Smartphone-based clinical diagnostics: Towards democratization of evidence-based health care,” Journal of Internal Medicine (2018)

DOI: 10.1111/joim.12820

: S. Kahkeshani, J.E. Kong, Q. Wei, D. Tseng, O.B. Garner, A. Ozcan, and D. Di Carlo, “Ferrodrop dose-optimized-digital quantification of biomolecules in low-volume samples,” Analytical Chemistry (2018)

DOI: 10.1021/acs.analchem.8b00958

: M. Shimogawa, S. Ray, N. Kisalu, Y. Zhang, Q. Geng, A. Ozcan, and K. Hill, “Parasite motility is critical for virulence of African trypanosomes,” Scientific Reports (2018)

DOI: 10.1038/s41598-018-27228-0

: Y. Rivenson and A. Ozcan, “Toward a Thinking Microscope: Deep Learning in Optical Microscopy and Image Reconstruction,” OSA OPN (2018) – arXiv:1805.08970 (2018)

OSA OPN – arXiv:1805.08970

: Y. Wu, Y. Rivenson, Y. Zhang, Z. Wei, H. Gunaydin, X. Lin, and A. Ozcan, “Extended depth-of-field in holographic image reconstruction using deep learning based auto-focusing and phase-recovery,” Optica (2018) – arXiv:1803.08138 (2018)

DOI: 10.1364/OPTICA.5.000704 – arXiv:1803.08138

: Y. Zhang, M. Alexander, S. Yang, Y. Bian, E. Botvinick, J.R.T. Lakey, and A. Ozcan, “High-throughput screening of encapsulated islets using wide-field lens-free on-chip imaging,” ACS Photonics (2018) – arXiv:1803.03534 (2018)

DOI: 10.1021/acsphotonics.8b00343 – arXiv:1803.03534

: H.C. Koydemir and A. Ozcan, “Smartphones Democratize Advanced Biomedical Instruments and Foster Innovation,” Clinical Pharmacology & Therapeutics (2018)

DOI: 10.1002/cpt.1081 – PDF

: Z. Ballard, C. Brown and A. Ozcan, “Mobile Technologies for the Discovery, Analysis and Engineering of the Global Microbiome,” ACS Nano (2018)

DOI: 10.1021/acsnano.7b08660 – PDF

: M. Veli, and A. Ozcan, “Computational Sensing of Staphylococcus aureus on Contact Lenses using 3D Imaging of Curved Surfaces and Machine Learning,” ACS Nano (2018)

DOI: 10.1021/acsnano.7b08375 – PDF

: H.C. Koydemir, and A. Ozcan, “Wearable and Implantable Sensors for Biomedical Applications,” Annual Review of Analytical Chemistry (2018)

DOI: 10.1146/annurev-anchem-061417-125956 – PDF

: Y. Rivenson, H.C. Koydemir, H. Wang, Z. Wei, Z. Ren, H. Günaydın, Y. Zhang, Z. Göröcs, K. Liang, D. Tseng, A. Ozcan, “Deep learning enhanced mobile-phone microscopy,” ACS Photonics (2018) – arXiv:1712.04139 (2017)

DOI: 10.1021/acsphotonics.8b00146 – arXiv:1712.04139

: Y. Rivenson, Z. Gorocs, H. Gunaydin, Y. Zhang, H. Wang, and A. Ozcan, “Deep Learning Microscopy,” Optica (2017)

DOI: 10.1364/OPTICA.4.001437 – PDF

: D. Kim, Q. Wei, D.H. Kim, D. Tseng, J. Zhang, E. Pan, O. Garner, A. Ozcan, D. Di Carlo, “Enzyme-free Nucleic Acid Amplification Assay Using a Cellphone-Based Well Plate Fluorescence Reader,” Analytical Chemistry (2017)

DOI: 10.1021/acs.analchem.7b03848

: Y. Rivenson, Y. Zhang, H. Günaydın, D. Teng, and A. Ozcan, “Phase recovery and holographic image reconstruction using deep learning in neural networks,” Light: Science & Applications (Nature Publishing Group) (2017)

DOI: 10.1038/lsa.2017.141 – PDF

: Z.S. Ballard, Y. Zhang and A. Ozcan, “Off-axis holography and micro-optics improve lab-on-a-chip imaging,” Light: Science & Applications (Nature Publishing Group) (2017)

DOI:10.1038/lsa.2017.105

: Y. Zhang, H. Wang, Y. Wu, M. Tamamitsu, and A. Ozcan, “Edge sparsity criterion for robust holographic autofocusing,” Optics Letters (2017)

DOI: 10.1364/OL.42.003824 – PDF

: E. McLeod and A. Ozcan, “Microscopy without lenses,” Physics Today (2017)

DOI: 10.1063/PT.3.3693 – PDF

: Y. Wu and A. Ozcan, “Lensless digital holographic microscopy and its applications in biomedicine and environmental monitoring,” Methods (2017)

DOI: 10.1016/j.ymeth.2017.08.013 – PDF

: P. Minzioni, et al., “Roadmap for optofluidics,” Journal of Optics (2017)

DOI:10.1088/2040-8986/aa783b – PDF

: M. Daloglu, W. Luo, F. Shabbir, F. Lin, K. Kim, I. Lee, J. Jiang, W. Cai, V. Ramesh, and M. Yu, and A. Ozcan, “Label-free 3D computational imaging of spermatozoon locomotion, head spin and flagellum beating over a large volume,” Light: Science & Applications (Nature Publishing Group) (2017) – Cover Article

DOI: 10.1038/lsa.2017.121 – PDF

: Y. Zhang, Y. Shin, K. Sung, S. Yang, H. Chen, H. Wang, D. Teng, Y. Rivenson, R.P. Kulkarni, and A. Ozcan, “3D Imaging of Optically Cleared Tissue Using a Simplified CLARITY Method and On-Chip Microscopy,” Science Advances (AAAS) (2017)

DOI: 10.1126/sciadv.1700553

: D.Y. Joh, A.M. Hucknall, Q. Wei, K.A. Mason, C.M. Fontes, R.T. Hill, R. Blair, Z. Zimmers, R.K. Achar, D. Tseng, R. Gordan, M. Freemark, A. Ozcan, A. Chilkoti, “Inkjet Printed Point-of-Care Immunoassay on a Nanoscale Polymer Brush Enables Sub-Picomolar Detection of Analytes in Blood,” Proceedings of the National Academy of Sciences (PNAS) (2017)

DOI:10.1073/pnas.1703200114

: M.U. Daloglu and A. Ozcan, “Computational Imaging of Sperm Locomotion,” Biology of Reproduction (2017)

DOI: 10.1093/biolre/iox086

: A. Ray, M.U. Daloglu, J. Ho, A. Torres, E. Mcleod and A. Ozcan, “Computational sensing of herpes simplex virus using a cost-effective on-chip microscope,” Scientific Reports (Nature Publishing Group) (2017)

DOI:10.1038/s41598-017-05124-3

: H.C. Koydemir, S. Feng, K. Liang, R. Nadkarni, P. Benien, and A. Ozcan, “Comparison of Supervised Machine Learning Algorithms for Waterborne Pathogen Detection using Mobile-Phone Fluorescence Microscopy,” Nanophotonics (2017)

DOI: nanoph-2017-0001

: H.C. Koydemir, and A. Ozcan, “Mobile phones create new opportunities for microbiology research and clinical applications,” Future Microbiology (2017)

DOI:10.2217/fmb-2017-0046

: Q. Wei, G. Acuna, S. Kim, C. Vietz, D. Tseng, J. Chae, D. Shir, W. Luo, P. Tinnefeld, and A. Ozcan, “Plasmonics Enhanced Smartphone Fluorescence Microscopy,” Scientific Reports (Nature Publishing Group) (2017)

DOI: 10.1038/s41598-017-02395-8 – PDF

: A. Ray, S. Li, T. Segura, and A. Ozcan, “High-throughput quantification of nanoparticle degradation using computational microscopy and its application to drug delivery nanocapsules,” ACS Photonics (2017)

DOI: 10.1021/acsphotonics.7b00122 – PDF

: I. Bogoch, H.C. Koydemir, D. Tseng, R. Ephraim, E. Duah, J. Tee, J. Andrews, and A. Ozcan, “Evaluation of a mobile phone-based microscope for screening of Schistosoma haematobium infection in rural Ghana,” American Journal of Tropical Medicine & Hygiene (2017)

DOI:10.4269/ajtmh.16-0912

: Y. Wu, A. Shiledar, Y. Li, J. Wong, S. Feng, X. Chen, C. Chen, K. Jin, S. Janamian, Z. Yang, Z.S. Ballard, Z. Göröcs, A. Feizi, and A. Ozcan, “Air Quality Monitoring Using Mobile Microscopy and Machine Learning,” Light: Science & Applications (Nature Publishing Group) (2017)

DOI: 10.1038/lsa.2017.46 – PDF

: M. Daloglu, A. Ray, Z. Gorocs, M. Xiong, R. Malik, G. Bitan, E. McLeod and A. Ozcan, “Computational On-Chip Imaging of Nanoparticles and Biomolecules using Ultraviolet Light,” Scientific Reports (Nature Publishing Group) (2017)

DOI: 10.1038/srep44157

: J. Kong, Q. Wei, D. Tseng, J. Zhang, E. Pan, M. Lewinski, O. Garner, A. Ozcan, and D. Di Carlo, “Highly stable and sensitive nucleic acid amplification and cell-phone based readout” ACS Nano (2017)

DOI: 10.1021/acsnano.6b08274

: Z. Ballard, D. Shir, A. Bhardwaj, S. Bazargan, S. Sathianathan, and A. Ozcan, “Computational Sensing Using Low-Cost and Mobile Plasmonic Readers Designed by Machine Learning,” ACS Nano (2017)

DOI: 10.1021/acsnano.7b00105

: M. Kühnemund, Q. Wei, E. Darai, Y. Wang, I. Hernandez-Neuta, Z. Yang, D. Tseng, A, Ahlford, L. Mathot, T. Sjöblom, A. Ozcan, and M. Nilsson, “Targeted DNA sequencing and in situ mutation analysis using mobile phone microscopy,” Nature Communications (2017)

DOI: 10.1038/NCOMMS13913 – PDF

: S. Feng, D. Tseng, D. DiCarlo, O. Garner and A. Ozcan, “High-throughput and automated diagnosis of antimicrobial resistance using a cost-effective cellphone-based micro-plate reader,” Scientific Reports (Nature Publishing Group) (2016)

DOI: 10.1038/srep39203

: Y. Rivenson, Y. Wu, H. Wang, Y. Zhang, A. Feizi and A. Ozcan, ”Sparsity-based multi-height phase recovery in holographic microscopy,” Scientific Reports (Nature Publishing Group) (2016)

DOI: 10.1038/srep37862

: H. Wang, Z. Gorocs, W. Luo, Y. Zhang, Y. Rivenson, L.A. Bentolila, and A. Ozcan, ”Computational out-of-focus imaging increases the space-bandwidth product in lens-based coherent microscopy,” Optica (2016)

DOI: 10.1364/OPTICA.3.001422

: A. Feizi, Y. Zhang, A. Greenbaum, A. Guziak, M. Luong, R.Y. Chan, B. Berg, H. Ozkan, W. Luo, M. Wu, Y. Wu, and A. Ozcan, ”Rapid, portable and cost-effective yeast cell viability and concentration analysis using lensfree on-chip microscopy and machine learning,” Lab on a Chip (2016)

DOI:10.1039/C6LC00976J – PDF

: Z. Gorocs, Y. Rivenson, H.C. Koydemir, D. Tseng, T. Troy, V. Demas, and A. Ozcan, ”Quantitative fluorescence sensing through highly autofluorescent, scattering and absorbing media using mobile microscopy,” ACS Nano (2016)

DOI:10.1021/acsnano.6b05129 – PDF

: D. Kim, O. Garner, A. Ozcan and D. Di Carlo, ”Homogenous Entropy-driven Amplified Detection of Biomolecular Interactions,” ACS Nano (2016)

DOI:10.1021/acsnano.6b02060

: B. Munos, et al., ”Mobile health: the power of wearables, sensors, and apps to transform clinical trials,” Annals of the New York Academy of Sciences (2016)

DOI:10.1111/nyas.13117

: Y. Zhang, S.Y. Lee, Y. Zhang, D. Furst, J. Fitzgerald and A. Ozcan, ”Wide-field imaging of birefringent synovial fluid crystals using lens-free polarized microscopy for gout diagnosis,” Scientific Reports (Nature Publishing Group) (2016)

DOI:10.1038/srep28793

: Y. Wu, Y. Zhang, W. Luo and A. Ozcan, ”Demosaiced pixel super-resolution for multiplexed holographic color imaging,” Scientific Reports (Nature Publishing Group) (2016)

DOI:10.1038/srep28601

: Y. Zhang, Y. Wu, Y. Zhang, and A. Ozcan, ”Color calibration and fusion of lens-free and mobile-phone microscopy images for high-resolution and accurate color reproduction,” Scientific Reports (Nature Publishing Group) (2016)

DOI:10.1038/srep27811

: E. McLeod and A. Ozcan, ”Unconventional methods of imaging: computational microscopy and compact implementations,” Reports on Progress in Physics (2016)

DOI:10.1088/0034-4885/79/7/076001 – PDF

: W. Luo, Y. Zhang, Z. Gorocs, A. Feizi and A. Ozcan, ”Propagation phasor approach for holographic image reconstruction,” Scientific Reports (Nature Publishing Group) (2016)

DOI:10.1038/srep22738

: A. Ozcan and E. McLeod, ”Lensless Imaging and Sensing,” The Annual Review of Biomedical Engineering (2016)

DOI:10.1146/annurev-bioeng-092515-010849 – PDF

: T-W. Su, I. Choi, J. Feng, K. Huang and A. Ozcan, ”High-throughput analysis of horse sperms’ 3D swimming patterns using computational on-chip imaging,” Animal Reproduction Science (2016)

DOI:10.1016/j.anireprosci.2015.12.012

: J.S. Biteen, P.C. Blainey, Z.G. Cardon, M. Chun, G.M. Church, P.C. Dorrestein, S.E. Fraser, J.A. Gilbert, J.K. Jansson, R. Knight, J.F. Miller, A. Ozcan, K.A. Prather, S.R. Quake, E.G. Ruby, P.A. Silver, S. Taha, G. van den Engh, P.S. Weiss, G.C.L. Wong, A.T. Wright, T.D. Young, ”Tools for the Microbiome: Nano and Beyond,” ACS Nano (2015)

DOI:10.1021/acsnano.5b07826 – PDF

: W. Luo, Y. Zhang, A. Feizi, Z. Gorocs, and A. Ozcan, ”Pixel super-resolution using wavelength scanning,” Light: Science & Applications (Nature Publishing Group) (2015)

DOI:10.1038/lsa.2016.60 – PDF

: D. Shir, Z.S. Ballard, and A. Ozcan, ”Flexible Plasmonic Sensors,” IEEE Journal of Selected Topics in Quantum Electronics (2015)

DOI:10.1109/JSTQE.2015.2507363 – Invited Manuscript

: A.P. Alivisatos, et al., ”A unified initiative to harness Earth’s microbiomes,” Science (2015)

DOI:10.1126/science.aac8480

: S.K. Vashist, P.B. Luppa, L.Y. Yeo, A. Ozcan, J.H.T. Luong, ”Emerging technologies for next-generation point-of-care testing,” Trends in Biotechnology (2015)

DOI:10.1016/j.tibtech.2015.09.00

: J.C. Contreras-Naranjo, Q. Wei, and A. Ozcan, ”Mobile Phone Based Microscopy, Sensing, and Diagnostics,” IEEE Journal of Selected Topics in Quantum Electronics (2015)

DOI:10.1109/JSTQE.2015.2478657 – Invited Manuscript

: S.K.J. Ludwig, C. Tokarski, S. Lang, L.A. Ginkel, H. Zhu, A. Ozcan and M.W.F. Nielen, ”Calling biomarkers in milk using a protein microarray on your smartphone,” PLoS ONE (2015)

DOI:10.1371/journal.pone.0134360

: B. Berg, B. Cortazar, D. Tseng, H. Ozkan, S. Feng, Q. Wei, R. Chan, J. Burbano, Q. Farooqui, M. Lewinski, D. Di Carlo, O.B. Garner, and A. Ozcan, ”Cellphone-Based Hand-Held Micro-Plate Reader for Point-of-Care Testing of Enzyme-Linked Immunosorbent Assays,” ACS Nano (2015)

DOI:10.1021/acsnano.5b03203

: Z. Göröcs, E. McLeod, and A. Ozcan, ”Enhanced light collection in fluorescence microscopy using self-assembled micro-reflectors,” Scientific Reports (Nature Publishing Group) (2015)

DOI:10.1038/srep10999

: E. McLeod, Q. Wei and A. Ozcan, ”Democratization of Nanoscale Imaging and Sensing Tools using Photonics,” Analytical Chemistry (2015)

DOI:10.1021/acs.analchem.5b01381

: Y. Zhang, A. Greenbaum, W. Luo, and A. Ozcan, ”Wide-field Pathology Imaging using On-chip Microscopy,” Virchows Archiv – The Journal of the European Society of Pathology (2015)

DOI:10.1007/s00428-015-1782-z – Invited Review Article

: W. Luo, F. Shabbir, C. Gong, C. Gulec, J. Pigeon, J. Shaw, A. Greenbaum, S. Tochitsky, C. Joshi, and A. Ozcan, ”High throughput on-chip analysis of high-energy charged particle tracks using lensfree imaging,” Applied Physics Letters (2015)

DOI:10.1063/1.4918741

: E. McLeod, T.U. Dincer, M. Veli, Y.N. Ertas, C. Nguyen, W. Luo, A. Greenbaum, A. Feizi, and A. Ozcan, ”High-Throughput and Label-Free Single Nanoparticle Sizing Based on Time-Resolved On-Chip Microscopy,” ACS Nano (2015)

DOI:10.1021/acsnano.5b00388

: B. Cortazar, H.C. Koydemir, D. Tseng, S. Feng and A. Ozcan, ”Quantification of Plant Chlorophyll Content Using Google Glass,” Lab on a Chip (2015)

DOI:10.1039/C4LC01279H

: W. Luo, A. Greenbaum, Y. Zhang, and A. Ozcan, ”Synthetic aperture based on-chip microscopy,” Light: Science & Applications (Nature Publishing Group) (2015)

DOI:10.1038/lsa.2015.34 – PDF

: A. Greenbaum, Y. Zhang, A. Feizi, P. Chung, W. Luo, S.R. Kandukuri, and A. Ozcan, ”Wide-field Computational Imaging of Pathology Slides using Lensfree On-Chip Microscopy,” Science Translational Medicine (AAAS) (2014)

DOI:10.1126/scitranslmed.3009850 – Reprint – Full Text

: H.C. Koydemir, Z. Gorocs, D. Tseng, B. Cortazar, S. Feng, R.Y.L. Chan, J. Burbano, E. McLeod, and A. Ozcan, ”Rapid imaging, detection and quantification of Giardia lamblia cysts using mobile-phone based fluorescent microscopy and machine learning,” Lab on a Chip (2014)

DOI:10.1039/C4LC01358A

: Q. Wei, W. Luo, S. Chiang, T. Kappel, C. Mejia, D. Tseng, R. Chan, E. Yan, H. Qi, F. Shabbir, H. Ozkan, S. Feng, and A. Ozcan, ”Imaging and Sizing of Single DNA Molecules on a Mobile-Phone,” ACS Nano (2014)

DOI:10.1021/nn505821y

: A.F. Coskun, A.E. Cetin, B.C. Galarreta, D.A. Alvarez, H. Altug, and A. Ozcan, ”Lensfree optofluidic plasmonic sensor for real-time and label-free monitoring of molecular binding events over a wide field-of-view,” Scientific Reports (Nature Publishing Group) (2014)

DOI:10.1038/srep06789

: E. McLeod and A. Ozcan, ”Nano-imaging enabled via self-assembly,” Nano Today (2014)

DOI:10.1016/j.nantod.2014.08.005

: E. McLeod, C. Nguyen, P. Huang, W. Luo, M. Veli, and A. Ozcan, ”Tunable vapor-condensed nanolenses,” ACS Nano (2014)

DOI:10.1021/nn502453h

: S.K.J. Ludwig, H. Zhu, S. Phillips, A. Shiledar, S. Feng, D. Tseng, L.A. van Ginkela, M.W.F. Nielen, and A. Ozcan, ”Cellphone-based detection platform for rbST biomarker analysis in milk extracts using a microsphere fluorescence immunoassay,” Analytical and Bioanalytical Chemistry (2014)

DOI:10.1007/s00216-014-7984-4

: Z. Göröcs and A. Ozcan, ”Biomedical Imaging and Sensing using Flatbed Scanners,” Lab on a Chip (2014)

DOI:10.1039/C4LC00530A

: A. Ozcan, ”Educational games for malaria diagnosis,” Science Translational Medicine (AAAS) (2014)

DOI:10.1126/scitranslmed.3009172 – PDF –

Malaria Training Game

: I. Pushkarsky, Y. Lyb, W. Weaver, T-W. Su, O. Mudanyali, A. Ozcan, and D. Di Carlo, ”Automated single-cell motility analysis on a chip using lensfree microscopy,” Scientific Reports (Nature Publishing Group) (2014)

DOI:10.1038/srep04717

: A. Ozcan, ”Mobile Phones Democratize and Cultivate Next-Generation Imaging, Diagnostics and Measurement Tools,” Lab on a Chip (2014)

DOI:10.1039/C4LC00010B

: S. Feng, R. Caire, B. Cortazar, M. Turan, A. Wong, and A. Ozcan, ”Immunochromatographic Diagnostic Test Analysis Using Google Glass,” ACS Nano (2014)

DOI:10.1021/nn500614k

: I. Sencan, A.F. Coskun, U. Sikora, and A. Ozcan, ”Spectral Demultiplexing in Holographic and Fluorescent On-chip Microscopy,” Scientific Reports (Nature Publishing Group) (2014)

DOI:10.1038/srep03760

: Q. Wei, R. Nagi, K. Sadeghi, S. Feng, E. Yang, S. Ki, R. Caire, D. Tseng, and A. Ozcan, ”Detection and Spatial Mapping of Mercury Contamination in Water Samples using a Smart-Phone,” ACS Nano (2014)

DOI:10.1021/nn406571t

: A.E. Cetin, A.F. Coskun, B.C. Galarreta, M. Huang, D. Herman, A. Ozcan and H. Altug, ”Handheld High-Throughput Plasmonic Biosensor using Computational On-Chip Imaging,” Light: Science & Applications (Nature Publishing Group) (2014)

DOI:10.1038/lsa.2014.3 – PDF

: S. K. Vashista, O. Mudanyali, E. M. Schneidere, R. Zengerle, and A. Ozcan, ”Cellphone-based devices for bioanalytical sciences,” Analytical and Bioanalytical Chemistry (2013)

DOI:10.1007/s00216-013-7473-1

: A. Greenbaum, N. Akbari, A. Feizi, W. Luo, and A. Ozcan, ”Field-Portable Pixel Super-Resolution Colour Microscope,” PLoS ONE (2013)

DOI:10.1371/journal.pone.0076475

: Z. Göröcs, Y. Ling, M. Dai Yu, D. Karahalios, K. Mogharabi, K. Lu, Q. Wei, and A. Ozcan, ”Giga-pixel fluorescent imaging over an ultra-large field-of-view using a flatbed scanner,” Lab on a Chip (2013)

DOI:10.1039/C3LC51005K

: Q. Wei, H. Qi, W. Luo, D. Tseng, S. Jung Ki, Z. Wan, Z. Göröcs, L.A. Bentolila, T. Wu, Ren Sun, and A. Ozcan, ”Fluorescent Imaging of Single Nanoparticles and Viruses on a Smart-Phone,” ACS Nano (2013)

DOI:10.1021/nn4037706

: A.F. Coskun, and A. Ozcan, ”Computational Imaging, Sensing and Diagnostics for Global Health Applications,” Current Opinion in Biotechnology (2013)

DOI:10.1016/j.copbio.2013.08.008

: A.F. Coskun, R. Nagi, K. Sadeghi, S. Phillips, and A. Ozcan, ”Albumin testing in urine using a smart-phone,” Lab on a Chip (2013)

DOI:10.1039/C3LC50785H

: Y. Hennequin, C.P. Allier, E. McLeod, O. Mudanyali, D. Migliozzi, A. Ozcan, and J.-M. Dinten, ”Optical detection and sizing of single nano-particles using continuous wetting films,” ACS Nano (2013)

DOI:10.1021/nn403431y

: I. Navruz, A.F. Coskun, J. Wong, S. Mohammad, D. Tseng, R. Nagi, S. Phillips, and A. Ozcan, ”Smart-phone based computational microscopy using multi-frame contact imaging on a fiber-optic array,” Lab on a Chip (2013)

DOI:10.1039/C3LC50589H

: A. Greenbaum, A. Feizi, N. Akbari, and A. Ozcan, ”Wide-field computational color imaging using pixel super-resolved on-chip microscopy,” Optics Express (2013)

DOI:10.1364/OE.21.012469

: A. Greenbaum, W. Luo, B. Khademhosseinieh, T-W. Su, A.F. Coskun, and A. Ozcan, ”Increased space-bandwidth product in pixel super-resolved lensfree on-chip microscopy,” Scientific Reports (Nature Publishing Group) (2013)

DOI:10.1038/srep01717

: Q. Wei, E. McLeod, H. Qi, Z. Wan, R. Sun, and A. Ozcan, ”On-Chip Cytometry using Plasmonic Nanoparticle Enhanced Lensfree Holography,” Scientific Reports (Nature Publishing Group) (2013)

DOI:10.1038/srep01699

: K-W. Huang, T-W. Su, A. Ozcan, and P-Y. Chiou, ”Optoelectronic Tweezers Integrated with Lens-free Holographic Microscopy for Wide-field Interactive Cell and Particle Manipulation on a Chip,” Lab on a Chip (2013)

DOI:10.1039/C3LC50168J

: T-W. Su, I. Choi, J. Feng, K. Huang, E. McLeod, and A. Ozcan, ”Sperm Trajectories Form Chiral Ribbons,” Scientific Reports (Nature Publishing Group) (2013)

DOI:10.1038/srep01664

: H. Zhu, and A. Ozcan, ”Wide-field fluorescent microscopy and fluorescent imaging flow cytometry on a cell-phone,” Journal of Visualized Experiments (JoVE) (2013)

DOI:10.3791/50451

: E. McLeod, W. Luo, O. Mudanyali, A. Greenbaum, and A. Ozcan, ”Toward Giga-pixel Nanoscopy On a Chip: A computational wide-field look at the nano-scale without the use of lenses,” Lab on a Chip (2013)

DOI:10.1039/C3LC50222H

: O. Mudanyali, E. McLeod, W. Luo, A. Greenbaum, A.F. Coskun, Y. Hennequin, C. Allier, and A. Ozcan, ”Wide-field optical detection of nano-particles using on-chip microscopy and self-assembled nano-lenses,” Nature Photonics (2013)

DOI:10.1038/NPHOTON.2012.337

: H. Zhu, I. Sencan, J. Wong, S. Dimitrov, D. Tseng, K. Nagashima, and A. Ozcan, ”Cost-effective and Rapid Blood Analysis on a Cell-phone,” Lab on a Chip (2013)

DOI:10.1039/C3LC41408F

: J. Weidling, S.O. Isikman, A. Greenbaum, A. Ozcan, and E. Botvinick, ”Lensfree Computational Imaging of Capillary Morphogenesis within 3D Substrates,” Journal of Biomedical Optics (2012)

DOI:10.1117/1.JBO.17.12.126018

: A.F. Coskun, J. Wong, D. Khodadadi, R. Nagi, A. Tey, and A. Ozcan, ”A personalized food allergen testing platform on a cellphone,” Lab on a Chip (2012)

DOI:10.1039/C2LC41152K – PDF

: S. Mavandadi, S. Feng, F. Yu, S. Dimitrov, K. Nielsen, W.R. Prescott, and A. Ozcan, ”A Mathematical Framework for Combining Decisions of Multiple Experts toward Accurate and Remote Diagnosis of Malaria Using Tele-Microscopy,” PLoS ONE (2012)

DOI:10.1371/journal.pone.0046192 – PDF

: S. Mavandadi, S. Feng, F. Yu, S. Dimitrov, R. Yu, and A. Ozcan, ”BioGames: A Platform for Crowd-sourced Bio-Medical Image Analysis and Tele-Diagnosis,” Games for Health Journal (2012)

DOI:10.1089/g4h.2012.0054 – PDF –

: T-W. Su, L. Xue and A. Ozcan, ”High-throughput lensfree 3D tracking of human sperms reveals rare statistics of helical trajectories,” Proceedings of the National Academy of Sciences (PNAS) (2012)

DOI:10.1073/pnas.1212506109 – PDF

: S.A. Arpali, C. Arpali, A.F. Coskun, H. Chiang, and A. Ozcan, ”High-throughput screening of large volumes of whole blood using structured illumination and fluorescent on-chip imaging,” Lab on a Chip (2012)

DOI:10.1039/C2LC40894E – PDF

: S.O. Isikman, A. Greenbaum, W. Luo, A.F. Coskun, and A. Ozcan, ”Giga-Pixel Lensfree Holographic Microscopy and Tomography using Color Image Sensors,” PLoS ONE (2012)

DOI:10.1371/journal.pone.0045044 – PDF

: H. Zhu, S.O. Isikman, O. Mudanyali, A. Greenbaum, and A. Ozcan, ”Optical Imaging Techniques for Point-of-care Diagnostics,” Lab on a Chip (2012)

DOI:10.1039/C2LC40864C – Invited Manuscript

: A. Greenbaum, W. Luo, T-W. Su, Z. Göröcs, L. Xue, S.O. Isikman, A.F. Coskun, O. Mudanyali, and A. Ozcan, ”Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy,” Nature Methods (2012)

DOI:10.1038/nmeth.2114 – PDF

: Z. Göröcs, and A. Ozcan, ”On-Chip Biomedical Imaging,” IEEE Reviews in Biomedical Engineering (2012)

DOI:10.1109/RBME.2012.2215847

: S. Mavandadi, S. Dimitrov, S. Feng, F. Yu, R. Yu, U. Sikora, and A. Ozcan, ”Crowd-sourced BioGames: Managing The Big Data Problem for Next-Generation Lab-on-a-Chip Platforms,” Lab on a Chip (2012)

DOI:10.1039/C2LC40614D –

: S.O. Isikman, W. Bishara, and A. Ozcan, “Lensfree On-chip Tomographic Microscopy employing Multi-Angle Illumination and Pixel Super-Resolution,” Journal of Visualized Experiments (JoVE) (66), e4161 (2012)

DOI:10.3791/4161

: E. McLeod, and A. Ozcan, “Nanofabrication using near-field optical probes,” Journal of the Association for Laboratory Automation (JALA) (2012)

DOI:10.1177/2211068212450289 – Invited Manuscript

: S. Mavandadi, S. Dimitrov, S. Feng, F. Yu, U. Sikora, O. Yaglidere, S. Padmanabhan, K. Nielsen, and A. Ozcan, “Distributed Medical Image Analysis and Diagnosis through Crowd-Sourced Games: A Malaria Case Study,” PLoS ONE (2012)

DOI:10.1371/journal.pone.0037245 –

: O. Mudanyali, S. Dimitrov, U. Sikora, S. Padmanabhan, I. Navruz, and A. Ozcan, “Integrated Rapid-Diagnostic-Test Reader Platform on a Cellphone,” Lab on a Chip (2012)

DOI:10.1039/C2LC40235A

: S.O. Isikman, A. Greenbaum, M. Lee, W. Bishara, O. Mudanyali, T. Su, and A. Ozcan, “Lensfree computational microscopy tools for cell and tissue imaging at the point-of-care and in low-resource settings,” Anal. Cell. Pathology, vol. 36, pp. 1-19 (2012)

DOI:10.3233/ACP-2012-0057

: A. Greenbaum, U. Sikora, and A. Ozcan, “Field-portable wide-field microscopy of dense samples using multi-height pixel super-resolution based lensfree imaging,” Lab on a Chip (2012)

DOI:10.1039/C2LC21072J

: H. Zhu, U. Sikora, and A. Ozcan, “Quantum dot enabled detection of Escherichia coli using a cell-phone,” Analyst (2012)

DOI:10.1039/C2AN35071H

: A. Greenbaum, and A. Ozcan, “Maskless imaging of dense samples using pixel super-resolution based multi-height lensfree on-chip microscopy,” Optics Express (2012)

DOI:10.1364/OE.20.003129

: S.B. Kim, H. Bae, K. Koo, M.R. Dokmeci, A. Ozcan, and A. Khademhosseini, “Lensfree Imaging for Biological Applications,” Journal of the Association for Laboratory Automation (JALA) (2012) – Cover Article

DOI:10.1177/2211068211426695

: S.O. Isikman, W. Bishara, U. Sikora, O. Yaglidere, and A. Ozcan, “Multi-angle illumination with pixel super-resolution enables lensfree on-chip tomography,” SPIE Newsroom (2011)

DOI:10.1117/2.1201111.003979

: S.O. Isikman, W. Bishara and A. Ozcan, “Partially Coherent Lensfree Tomographic Microscopy,” Applied Optics (2011)

DOI:10.1364/AO.50.00H253

: W. Bishara, S.O. Isikman, and A. Ozcan, “Lensfree Optofluidic Microscopy and Tomography,” Annals of Biomedical Engineering (ABME) (2011)

DOI:10.1007/s10439-011-0385-3

: M. Lee, O. Yaglidere, and A. Ozcan, “Field-portable reflection and transmission microscopy based on lensless holography,” Biomedical Optics Express (2011)

DOI:10.1364/BOE.2.002721

: O. Mudanyali, W. Bishara, and A. Ozcan, “Lensfree super-resolution holographic microscopy using wetting films on a chip,” Optics Express (2011)

DOI:10.1364/OE.19.017378

: A.F. Coskun, T. Su, I. Sencan, and A. Ozcan, “Lensless Fluorescent Microscopy on a Chip,” Journal of Visualized Experiments (JoVE) (2011)

DOI:10.3791/3181

: H. Zhu, S. Mavandadi, A.F. Coskun, O. Yaglidere, and A. Ozcan, “Optofluidic fluorescent imaging cytometry on a cell-phone,” Analytical Chemistry (2011)

DOI:10.1021/ac201587a

: S.O. Isikman, W. Bishara, O. Mudanyali, I. Sencan, T. Su, D. Tseng, O. Yaglidere, U. Sikora, A. Ozcan, “Lensfree On-Chip Microscopy and Tomography for Bio-Medical Applications,” IEEE Journal of Selected Topics in Quantum Electronics (2011)

DOI:10.1109/JSTQE.2011.2161460

: W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart, and A. Ozcan, “Handheld and lensless microscope identifies malaria parasites,” SPIE Newsroom (2011)

DOI:10.1117/2.1201107.003812

: G. Biener, A. Greenbaum, S.O. Isikman, K. Lee, D. Tseng and A. Ozcan, “Combined Reflection and Transmission Microscope for Telemedicine Applications in Field Settings,” Lab on a Chip (2011)

DOI:10.1039/C1LC20169G

: S.O. Isikman, W. Bishara, H. Zhu, and A. Ozcan, “Opto-fluidic Tomography On a Chip,” Applied Physics Letters (2011)

DOI:10.1063/1.3548564

: S.O. Isikman, W. Bishara, U. Sikora, O. Yaglidere, J. Yeah, and A. Ozcan, “Field-Portable Lensfree Tomographic Microscope,” Lab on a Chip (2011)

DOI:10.1039/C1LC20127A

: S.O. Isikman, W. Bishara, S. Mavandadi, F.W. Yu, S. Feng, R. Lau and A. Ozcan, “Lensfree Optical Tomographic Microscope with a Large Imaging Volume on a Chip” PNAS (2011)

DOI:10.1073/pnas.1015638108

: W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart, and A. Ozcan, “Holographic pixel super-resolution in portable lensless on-chip microscopy using a fiber-optic array,” Lab on a Chip (2011)

DOI:10.1039/C0LC00684J

: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Wide-field Lensless Fluorescent Microscopy Using a Tapered Fiber-optic Faceplate On a Chip,” Analyst (2011)

DOI:10.1039/C0AN00926A

: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Lensfree Fluorescent On-Chip Imaging of Transgenic Caenorhabditis elegans Over an Ultra-Wide Field-of-View,” PLoS ONE (2011)

DOI:10.1371/journal.pone.0015955

: W. Bishara, H. Zhu, and A. Ozcan, “Holographic Opto-fluidic Microscopy,” Optics Express (2010)

Optics Express Link

: B. Khademhosseini, G. Biener, I. Sencan, T. Su, A.F. Coskun and A. Ozcan, “Lensfree Sensing on a Micro-fluidic Chip using Plasmonic Nano-apertures,” Applied Physics Letters (2010)

DOI:10.1063/1.3521390

: H. Zhu, O. Yaglidere, T. Su, D. Tseng, and A. Ozcan, “Cost-effective and Compact Wide-field Fluorescent Imaging on a Cell-phone”, Lab on a Chip (2010)

DOI:10.1039/C0LC00358A

: B. Khademhosseini, G. Biener, I. Sencan, and A. Ozcan, “Lensfree Color Imaging On a Nano-structured Chip using Compressive Decoding,” Applied Physics Letters, 2010

DOI:10.1063/1.3521410

: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Lensfree Fluorescent On-Chip Imaging Over an Ultra-Wide Field-of-View using Compressive Sampling,” Special Issue of “Optics in 2010” Optics & Photonics News, December 2010

DOI:10.1364/OPN.21.12.000027

: T. Su, A. Erlinger, D. Tseng, and A. Ozcan, “A Compact and Light-weight Automated Semen Analysis Platform using Lensfree On-Chip Microscopy” Analytical Chemistry (2010)

DOI: 10.1021/ac101845q

: O. Mudanyali, C. Oztoprak, D. Tseng, A. Erlinger, and A. Ozcan, “Detection of Waterborne Parasites using Field-portable and Cost-effective Lensfree Microscopy,” Lab on a Chip (2010)

DOI: 10.1039/c004829a

: W. Bishara, T. Su, A.F. Coskun, and A. Ozcan, “Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution,” Optics Express Vol. 18, Issue 11, pp. 11181-11191 (2010)

DOI: 10.1364/OE.18.011181

: A.F. Coskun, I. Sencan, T. Su, and A. Ozcan, “Lensfree wide-field fluorescent imaging on a chip using compressive decoding of sparse objects,” Optics Express Vol. 18, Issue 10, pp. 10510-10523 (2010)

DOI: 10.1364/OE.18.010510

: S. Seo, S.O. Isikman, I. Sencan, O. Mudanyali, T. Su, W. Bishara, A. Erlinger, A. Ozcan, “High-throughput Lensfree Blood Analysis On a Chip,” Analytical Chemistry (2010)

DOI: 10.1021/ac1007915

: T. Su, S.O. Isikman, W. Bishara, D. Tseng, A. Erlinger and A. Ozcan, “Multi-angle lensless digital holography for depth resolved imaging on a chip,” Optics Express (2010)

DOI: 10.1364/OE.18.009690

: B. Khademhosseini, I. Sencan, G. Biener, T. Su, A.F. Coskun, D. Tseng and A. Ozcan, “Lensfree On-chip Imaging using Nano-structured Surfaces,” Applied Physics Letters 96, 171106 (2010)

Selected for the Virtual Journal of Biological Physics Research. Highlighted in Nature Photonics.

DOI: 10.1364/OE.18.009690

: D. Tseng, O. Mudanyali, C. Oztoprak, S.O. Isikman, I. Sencan, O. Yaglidere and A. Ozcan, “Lensfree Microscopy on a Cell-phone,” Lab Chip (2010) – Cover Article

DOI: 10.1039/C003477K

: O. Mudanyali, D. Tseng, C. Oh, S.O. Isikman, I. Sencan, W. Bishara, C. Oztoprak, S. Seo, B. Khademhosseini, and A. Ozcan, “Compact, Light-weight and Cost-effective Microscope based on Lensless Incoherent Holography for Telemedicine Applications,” Lab Chip (2010)

DOI: 10.1039/C000453G

: G.Stybayeva, O. Mudanyali, S. Seo, J. Silangcruz, M. Macal, E. Ramanculov, S. Dandekar, A. Erlinger, A. Ozcan, A. Revzin, “Lensfree Holographic Imaging of Antibody Microarrays for High-Throughput Detection of Leukocyte Numbers and Function,” Analytical Chemistry (2010)

DOI: 10.1021/ac100142a

: S.O. Isikman, I. Sencan, O. Mudanyali, W. Bishara, C. Oztoprak and A. Ozcan, “Color and Monochrome Lensless On-chip Imaging of Caenorhabditis Elegans Over a Wide Field-of-View,” Lab Chip (2010)

DOI: 10.1039/C001200A

: C. Oh, S. O. Isikman, B. Khademhosseini and A. Ozcan, “On-chip differential interference contrast microscopy using lensless digital holography,” Optics Express, Vol. 18 Issue 5, 4717-4726 (2010)

Selected for the Virtual Journal for Biomedical Optics.

DOI: 10.1364/OE.18.004717

: A.F. Coskun, T. Su, and A. Ozcan, “Wide field-of-view lens-free fluorescent imaging on a chip,” Lab Chip (2010)

DOI: 10.1039/b926561a

: A. Ozcan, S.O. Isikman, O. Mudanyali, D. Tseng, I. Sencan, “Lensfree on-chip holography facilitates novel microscopy applications,” SPIE Newsroom (2010)

DOI: 10.1117/2.1201005.002947

: A. Ozcan, “Smart Technology for Global Access to healthcare,” SPIE Newsroom (2010)

DOI: 10.1117/2.1201002.002568

: O. Mudanyali, A. Erlinger, S. Seo, T. Su, D. Tseng, A. Ozcan, “Lensless On-chip Imaging of Cells Provides a New Tool for Cell-Biology and Diagnostics,” Journal of Visualized Experiments (JoVE) (2009)

DOI: 10.3791/1650

: S. Seo, T. Su, D.K. Tseng, A. Erlinger, and A. Ozcan, “Lensfree Holographic Imaging for On-Chip Cytometry and Diagnostics,” Lab Chip (2009)

DOI:10.1039/B813943A

: Ting-wei Su, Sungkyu Seo, Anthony Erlinger, Derek Tseng, and Aydogan Ozcan, “Towards Wireless Health: Lensless On-Chip Cytometry,” Optics and Photonics News, Vol. 19, Issue 12, pp. 24-24 (2008)

DOI:10.1364/OPN.19.12.000024

: T. Su, S. Seo, A. Erlinger, D. Tseng and A. Ozcan, “Lensfree on-chip cytometry towards wireless health,” IEEE LEOS Newsletter, October 2008

Cover Article

: T. Su, S. Seo, A. Erlinger, and A. Ozcan, “Multi-color LUCAS: Lensfree on-chip cytometry using tunable monochromatic illumination and digital noise reduction,” Cellular and Molecular Bioengineering (2008)

DOI:10.1007/s12195-008-0018-6

Outstanding Paper Award – PRESS RELEASE – IN THE NEWS

: T. Su, S. Seo, A. Erlinger, and A. Ozcan, “High-throughput Imaging and Characterization of a Heterogeneous Cell Solution On a Chip,” Biotechnology and Bioengineering (2008)

DOI:10.1002/bit.22116

Highlighted in the Spotlight Feature of the Journal.

: A. Bilenca, J. Cao. M. Colice, A. Ozcan, B.E. Bouma, L. Raftery, G.J. Tearney, “Fluorescence Interferometry: Principles and Applications in Biology,” Ann. N.Y. Acad. Sci. 1130: 68–77 (2008)

DOI: 10.1196/annals.1430.038

: A. Ozcan, and U. Demirci, “Ultra wide-field lens-free monitoring of cells on-chip,” Lab Chip (2007)

DOI: 10.1039/b713695a

: A. Ozcan, E. Cubukcu, B.E. Bouma, F. Capasso, G.J. Tearney, “Differential Near-field Scanning Optical Microscopy using Sensor Arrays,” IEEE Journal of Selected Topics in Quantum Electronics 13, 1721 (2007)

(Invited)

DOI: 10.1109/JSTQE.2007.910799

: A. Ozcan, A. Bilenca, A.E. Desjardin, B. E. Bouma, G. J. Tearney, “A study of speckle reduction in optical coherence tomography images using digital filtering,” Journal of Optical Society of America, A 24, 1901 (2007)

DOI: 10.1364/JOSAA.24.001901

: A. Bilenca, T. Lasser, A. Ozcan, R. Leitgeb, B. E. Bouma, G. J. Tearney, “Image formation in fluorescence coherence-gated imaging through scattering media,” Optics Express 15, 2810 (2007)

DOI: 10.1364/OE.15.002810

: A. Ozcan, E. Cubukcu, A. Bilenca, K.B. Crozier, B.E. Bouma, F. Capasso, and G.J. Tearney, “Differential Near-field scanning optical microscopy,” Nano Letters 6, 2609 (2006)

DOI: 10.1021/nl062110v

: A. Ozcan and U. Demirci, “Rewritable self-assembled long-period gratings in photonic bandgap fibers using microparticles,” Optics Communications 270, 225 (2007)

(published online 10/2006)

DOI: 10.1016/j.optcom.2006.09.032

: A. Ozcan, A. Bilenca, B. E. Bouma, G. J. Tearney, “Mirror tunnel microscope,” Applied Physics Letters 89, 131124 (2006)

DOI: 10.1063/1.2356321

: A. Ozcan, A. Tewary, M. J. F. Digonnet, and G. S. Kino, “Observation of mode coupling in bitapered air-core fibers,” Optics Communications 271, 391 (2007)

(published online 11/2006)

DOI: 10.1016/j.optcom.2006.10.039

: A. Bilenca, A. Ozcan, B. E. Bouma, G. J. Tearney, “Fluorescence coherence tomography,” Optics Express 14, 7134-7143 (2006)

Selected to appear in The Virtual Journal for Biomedical Optics, Vol. 1, Issue 9, 2006.

Also highlighted in a research story in the Biophotonics International Magazine, October 2006.

DOI: 10.1364/OE.14.007134

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Quasi-phase-matched grating characterization using minimum-phase functions,” Optics Communications 269, 199

(published online 8/2006)

DOI: 10.1016/j.optcom.2006.07.047

: A. Ozcan, “Characterization of nonlinear thin films using logarithmic Hilbert transform,” Electronics Letters 42, 647-648 (2006)

DOI: 10.1049/iel:20060672

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, ” Minimum-phase function based processing in frequency-domain optical coherence tomography systems,” Journal of Optical Society of America, A 23, 1669-1677 (2006)

Selected to appear in The Virtual Journal for Biomedical Optics, Vol. 1, Issue 8, 2006

DOI: 10.1364/JOSAA.23.001669

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Characterization of fiber Bragg gratings using spectral interferometry based on minimum-phase functions,” IEEE Journal of Lightwave Technology 24, 1739-1757 (2006)

DOI: 10.1109/JLT.2006.871111

: A. Ozcan, M. J. F. Digonnet, L. Lablonde, D. Pureur and G. S. Kino, “A new iterative technique to characterize and design transmission fiber Bragg gratings,” IEEE Journal of Lightwave Technology 24, 1913-1921 (2006)

DOI: 10.1109/JLT.2006.871112

: U. Demirci, and A. Ozcan, “Picolitre acoustic droplet ejection by femtosecond laser micromachined multiple-orifice membrane-based 2D ejector arrays,” Electronics Letters 41, 1219-1220 (2005)

DOI: 10.1049/el:20053208

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Detailed analysis of inverse Fourier transform techniques to uniquely infer second-order nonlinearity profile of thin films,” Journal of Applied Physics 97, 013502 (2005)

DOI: 10.1063/1.1826216

: A. Ozcan, M. J. F. Digonnet, G. S. Kino, F. Ay, and A. Aydinli, “Characterization of thermally poled germanosilicate thin films,” Optics Express 12, 4698-4708 (2004)

DOI: 10.1364/OPEX.12.004698

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Group delay recovery using iterative processing of amplitude of transmission spectra of fibre Bragg gratings,” Electronics Letters 40, 1104-1105 (2004)

DOI: 10.1049/el:20046001

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Iterative processing of second-order optical nonlinearity depth profiles,” Optics Express 12, 3367-3376 (2004)

DOI: 10.1364/OPEX.12.003367

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Simplified inverse Fourier transform technique to measure optical nonlinearity profiles using reference sample,” Electronics Letters 40, 551-552 (2004)

DOI: 10.1049/el:20040361

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Improved technique to determine second-order optical nonlinearity profiles using two different samples,” Appl. Phys. Lett. 84, 681-683 (2004)

DOI: 10.1063/1.1644622

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Cylinder-assisted Maker fringe technique,” Electronics Letters 39, 1834-1835 (2003)

DOI: 10.1049/el:20031159

: A. Ozcan, M. J. F. Digonnet, and G. S. Kino, “Inverse Fourier Transform technique to determine second-order optical nonlinearity spatial profiles,” Appl. Phys. Lett. 82, 1362-1364 (2003)

DOI: 10.1063/1.1557789